Idiomarina tyrosinivorans (CC-PW-9, JCM 19757, BCRC 80745)

Name: Idiomarina tyrosinivorans (CC-PW-9, JCM 19757, BCRC 80745)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133294

Type strain

Strain Designation CC-PW-9

Culture col. no. CC-PW-9 JCM 19757 BCRC 80745

NCBI tax ID(s) 1445662

Special Collections JCM Literature strains

Links

Idiomarina tyrosinivorans CC-PW-9 is an obligate aerobe, Gram-negative, motile prokaryote that forms circular colonies and was isolated from surface seawater collected at an estuary.

Gram-negative motile vibrio-shaped colony-forming obligate aerobe genome sequence 16S sequence

Name and taxonomic classification

SI-ID 24909

BCRC 80745,JCM 19757

@ref 20215

Last LPSN update 2025-12-16 10:01:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Idiomarinaceae

Genus Idiomarina

Species Idiomarina tyrosinivorans

Full scientific name Idiomarina tyrosinivorans Hameed et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
25071	negative	1.0-2.4 µm	0.3-0.4 µm	vibrio-shaped		monotrichous, polar

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25071	0.5-1.5 mm	beige	circular	2 days	MA (marine agar)

Culture and growth conditions

Culture medium

@ref	Name	Growth
25071	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
25071	positive	growth	20.0-40.0
25071	positive	optimum	37	mesophilic
67770	positive	growth	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25071	positive	optimum	7
25071	positive	growth	6.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
25071	obligate aerobe
125439	obligate aerobe	97.4

Spore formation

25071

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
25071	NaCl		optimum	8.0-10.0 %
25071	NaCl	positive	growth	6.0-12.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25071	17521 ChEBI	(-)-quinic acid	-	oxidation
25071	62064 ChEBI	2,3-butanediol	-	oxidation
25071	64552 ChEBI	2-hydroxybutyrate	-	oxidation
25071	16763 ChEBI	2-oxobutanoate	+	oxidation
25071	30916 ChEBI	2-oxoglutarate	+	oxidation
25071	28644 ChEBI	2-oxopentanoate	+	oxidation
25071	37054 ChEBI	3-hydroxybutyrate	-	oxidation
25071	18240 ChEBI	4-hydroxy-L-proline	-	oxidation
25071	16724 ChEBI	4-hydroxybutyrate	-	oxidation
25071	18101 ChEBI	4-hydroxyphenylacetic acid	-	oxidation
25071	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	-	hydrolysis
25071	30089 ChEBI	acetate	-	oxidation
25071	17128 ChEBI	adipate	+	assimilation
25071	40585 ChEBI	alpha-cyclodextrin	+	oxidation
25071	17925 ChEBI	alpha-D-glucose	-	oxidation
25071	36219 ChEBI	alpha-lactose	-	oxidation
25071	73706 ChEBI	bromosuccinate	-	oxidation
25071	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
25071	17126 ChEBI	carnitine	-	oxidation
25071		casein	+	hydrolysis
25071	17057 ChEBI	cellobiose	-	oxidation
25071	17029 ChEBI	chitin	-	hydrolysis
25071	16383 ChEBI	cis-aconitate	-	oxidation
25071	16947 ChEBI	citrate	+	oxidation
25071	15570 ChEBI	D-alanine	-	oxidation
25071	18333 ChEBI	D-arabitol	-	oxidation
25071	15824 ChEBI	D-fructose	-	oxidation
25071	15895 ChEBI	D-galactonic acid lactone	-	oxidation
25071	12936 ChEBI	D-galactose	-	oxidation
25071	18024 ChEBI	D-galacturonic acid	-	oxidation
25071	30612 ChEBI	D-glucarate	-	oxidation
25071	8391 ChEBI	D-gluconate	-	oxidation
25071	17784 ChEBI	D-glucosaminic acid	-	oxidation
25071	17634 ChEBI	D-glucose	+	assimilation
25071	14314 ChEBI	D-glucose 6-phosphate	-	oxidation
25071	15748 ChEBI	D-glucuronate	-	oxidation
25071	16899 ChEBI	D-mannitol	-	oxidation
25071	16899 ChEBI	D-mannitol	+	assimilation
25071	16024 ChEBI	D-mannose	-	oxidation
25071	16024 ChEBI	D-mannose	+	assimilation
25071	27605 ChEBI	D-psicose	+	oxidation
25071	16523 ChEBI	D-serine	-	oxidation
25071	17924 ChEBI	D-sorbitol	-	oxidation
25071	27689 ChEBI	decanoate	+	assimilation
25071	23652 ChEBI	dextrin	-	oxidation
25071		egg yolk	-	hydrolysis
25071	17113 ChEBI	erythritol	-	oxidation
25071	4853 ChEBI	esculin	-	hydrolysis
25071	16000 ChEBI	ethanolamine	-	oxidation
25071	15740 ChEBI	formate	-	oxidation
25071	16865 ChEBI	gamma-aminobutyric acid	-	oxidation
25071	5291 ChEBI	gelatin	+	hydrolysis
25071	28066 ChEBI	gentiobiose	-	oxidation
25071	17234 ChEBI	glucose	-	fermentation
25071	29042 ChEBI	glucose 1-phosphate	-	oxidation
25071	32323 ChEBI	glucuronamide	-	oxidation
25071	17754 ChEBI	glycerol	-	oxidation
25071	14336 ChEBI	glycerol 1-phosphate	-	oxidation
25071	28087 ChEBI	glycogen	+	oxidation
25071	73804 ChEBI	glycyl L-aspartic acid	+	oxidation
25071	73784 ChEBI	glycyl-l-glutamate	-	oxidation
25071	17596 ChEBI	inosine	-	oxidation
25071	17240 ChEBI	itaconate	-	oxidation
25071	21217 ChEBI	L-alaninamide	+	oxidation
25071	16977 ChEBI	L-alanine	+	oxidation
25071	73786 ChEBI	L-alanylglycine	+	oxidation
25071	30849 ChEBI	L-arabinose	-	oxidation
25071	30849 ChEBI	L-arabinose	+	assimilation
25071	17196 ChEBI	L-asparagine	+	oxidation
25071	29991 ChEBI	L-aspartate	+	oxidation
25071	18287 ChEBI	L-fucose	-	oxidation
25071	29985 ChEBI	L-glutamate	+	oxidation
25071	15971 ChEBI	L-histidine	-	oxidation
25071	15603 ChEBI	L-leucine	+	oxidation
25071	15729 ChEBI	L-ornithine	-	oxidation
25071	17295 ChEBI	L-phenylalanine	-	oxidation
25071	17203 ChEBI	L-proline	+	oxidation
25071	18183 ChEBI	L-pyroglutamic acid	-	oxidation
25071	62345 ChEBI	L-rhamnose	-	oxidation
25071	17115 ChEBI	L-serine	+	oxidation
25071	16857 ChEBI	L-threonine	-	oxidation
25071	17895 ChEBI	L-tyrosine	+	hydrolysis
25071	24996 ChEBI	lactate	-	oxidation
25071	6359 ChEBI	lactulose	+	oxidation
25071	25115 ChEBI	malate	+	assimilation
25071	15792 ChEBI	malonate	-	oxidation
25071	17306 ChEBI	maltose	-	oxidation
25071	17306 ChEBI	maltose	+	assimilation
25071	28053 ChEBI	melibiose	-	oxidation
25071	320055 ChEBI	methyl beta-D-glucopyranoside	-	oxidation
25071	51850 ChEBI	methyl pyruvate	+	oxidation
25071	75146 ChEBI	monomethyl succinate	-	oxidation
25071	17268 ChEBI	myo-inositol	-	oxidation
25071	28037 ChEBI	N-acetylgalactosamine	-	oxidation
25071	506227 ChEBI	N-acetylglucosamine	-	oxidation
25071	506227 ChEBI	N-acetylglucosamine	+	assimilation
25071	17632 ChEBI	nitrate	-	reduction
25071	18401 ChEBI	phenylacetate	+	assimilation
25071	50048 ChEBI	phenylethylamine	-	oxidation
25071	32032 ChEBI	potassium gluconate	+	assimilation
25071	17272 ChEBI	propionate	-	oxidation
25071	17148 ChEBI	putrescine	-	oxidation
25071	16634 ChEBI	raffinose	-	oxidation
25071	15963 ChEBI	ribitol	-	oxidation
25071	41865 ChEBI	sebacic acid	-	oxidation
25071	53258 ChEBI	sodium citrate	+	assimilation
25071	28017 ChEBI	starch	-	hydrolysis
25071	143136 ChEBI	succinamate	-	oxidation
25071	30031 ChEBI	succinate	-	oxidation
25071	17992 ChEBI	sucrose	-	oxidation
25071	17748 ChEBI	thymidine	-	oxidation
25071	27082 ChEBI	trehalose	-	oxidation
25071	27897 ChEBI	tryptophan	-	energy source
25071	32528 ChEBI	turanose	+	oxidation
25071	53424 ChEBI	tween 20	+	hydrolysis
25071	53423 ChEBI	tween 40	+	oxidation
25071	53426 ChEBI	tween 80	+	hydrolysis
25071	53426 ChEBI	tween 80	+	oxidation
25071	16199 ChEBI	urea	+	hydrolysis
25071	16704 ChEBI	uridine	-	oxidation
25071	27248 ChEBI	urocanic acid	-	oxidation
25071	37166 ChEBI	xylan	-	hydrolysis
25071	17151 ChEBI	xylitol	-	oxidation

Antibiotic resistance

@ref	ChEBI	Group ID	Metabolite
25071	2637		amikacin
25071	28971	20	ampicillin
25071	478164		cefepime
25071	3508		ceftazidime
25071	100241		ciprofloxacin
25071	48947	18	clavulanic acid
25071	48947	23	clavulanic acid
25071	3770		co-trimoxazole
25071	37943		colistin
25071	17833		gentamicin
25071	471744		imipenem
25071	43968		meropenem
25071	8232		piperacillin
25071	8232	16	piperacillin
25071	8232	21	piperacillin
25071	8232	22	piperacillin
25071	8653	24	pyocyanin
25071	8653	23	pyocyanin
25071	8653	21	pyocyanin
25071	8653	22	pyocyanin
25071	9321	20	sulbactam
25071	9421	16	tazobactam
25071	9421	22	tazobactam
25071	9587		ticarcillin
25071	9587	18	ticarcillin
25071	9587	24	ticarcillin
25071	9587	23	ticarcillin
25071	28864		tobramycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25071	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25071	35581 ChEBI	indole	-

Enzymes

@ref	Value	Activity	Ec
25071	acid phosphatase	+	3.1.3.2
25071	alkaline phosphatase	+	3.1.3.1
25071	alpha-chymotrypsin	+	3.4.21.1
25071	alpha-fucosidase	-	3.2.1.51
25071	alpha-galactosidase	-	3.2.1.22
25071	alpha-glucosidase	-	3.2.1.20
25071	alpha-mannosidase	-	3.2.1.24
25071	arginine dihydrolase	-	3.5.3.6
25071	beta-galactosidase	-	3.2.1.23
25071	beta-glucosidase	-	3.2.1.21
25071	beta-glucuronidase	-	3.2.1.31
25071	catalase	+	1.11.1.6
25071	cystine arylamidase	+	3.4.11.3
25071	cytochrome oxidase	+	1.9.3.1
25071	esterase (C 4)	+
25071	esterase Lipase (C 8)	+
25071	leucine arylamidase	+	3.4.11.1
25071	lipase (C 14)	-
25071	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25071	naphthol-AS-BI-phosphohydrolase	+
25071	trypsin	-	3.4.21.4
25071	tryptophan deaminase	-	4.1.99.1
25071	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	CMP-KDO biosynthesis	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	palmitate biosynthesis	100	22 of 22
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	gluconeogenesis	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	leucine metabolism	84.62	11 of 13
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	serine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	glutathione metabolism	71.43	10 of 14
66794	lipid metabolism	70.97	22 of 31
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	octane oxidation	66.67	2 of 3
66794	valine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	tyrosine metabolism	64.29	9 of 14
66794	purine metabolism	63.83	60 of 94
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	cellulose degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	factor 420 biosynthesis	60	3 of 5
66794	gallate degradation	60	3 of 5
66794	arginine metabolism	58.33	14 of 24
66794	tryptophan metabolism	57.89	22 of 38
66794	propanol degradation	57.14	4 of 7
66794	citric acid cycle	57.14	8 of 14
66794	d-mannose degradation	55.56	5 of 9
66794	pyrimidine metabolism	55.56	25 of 45
66794	urea cycle	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	lysine metabolism	52.38	22 of 42
66794	acetate fermentation	50	2 of 4
66794	quinate degradation	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	heme metabolism	50	7 of 14
66794	isoprenoid biosynthesis	50	13 of 26
66794	ethanol fermentation	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	methionine metabolism	46.15	12 of 26
66794	cysteine metabolism	44.44	8 of 18
66794	polyamine pathway	43.48	10 of 23
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	myo-inositol biosynthesis	40	4 of 10
66794	vitamin K metabolism	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	oxidative phosphorylation	38.46	35 of 91
66794	pentose phosphate pathway	36.36	4 of 11
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	vitamin B1 metabolism	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	glycine metabolism	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	degradation of pentoses	28.57	8 of 28
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	degradation of hexoses	27.78	5 of 18
66794	ascorbate metabolism	27.27	6 of 22
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	allantoin degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Estuary
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture temperature	Isolation procedure
25071	surface seawater collected at an estuary	Pingtung	Taiwan, Province of China	TWN	Asia	22	120.444 22/120.444	marine agar 2216 (MA; BD Difco)	30	standard dilution-to-extinction plating technique
67770	Estuarine water at Pingtung		Taiwan, Province of China	TWN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KF732819 (>99% sequence identity) for Idiomarina tyrosinivorans subclade from Microbeatlas

Aquatic Samples	141
Soil Samples	58
Animal Samples	27
Plant Samples	7
Total Samples	233

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM398747v1 assembly for Idiomarina tyrosinivorans CC-PW-9	contig	GCA_003987475	1445662.3	2895617523	1445662	72.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
25071	Idiomarina tyrosinivorans strain CC-PW-9 16S ribosomal RNA gene, partial sequence	KF732819	1508		1445662

GC content

@ref	GC-content (mol%)	Method
25071	51.1	high performance liquid chromatography (HPLC)
67770	49.25	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Idiomarina tyrosinivorans CC-PW-9
NCBI: GCA_003987475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	77.20	no
125439	motility	BacteriaNetⓘ	yes	70.80	no
125439	gram_stain	BacteriaNetⓘ	negative	60.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Idiomarina tyrosinivorans sp. nov., isolated from estuarine surface water.	Hameed A, Lin SY, Lai WA, Shahina M, Liu YC, Hsu YH, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.001525	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25071	A. L. Hameed, S. Y.,Lai, W. A.,Shahina, M.,Liu, Y. C.,Hsu, Y. H.,Young, C. C.: Idiomarina tyrosinivorans sp. nov., isolated from estuarine surface water. IJSEM 66: 5384 - 5391 2016 ( DOI 10.1099/ijsem.0.001525 , PubMed 27692036 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Idiomarina tyrosinivorans (CC-PW-9, JCM 19757, BCRC 80745)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003987475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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