Actinoplanes subglobosus (A-T 5400, BCC 42734, TBRC 5832)

Name: Actinoplanes subglobosus (A-T 5400, BCC 42734, TBRC 5832)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133187

Type strain

Strain Designation A-T 5400

Culture col. no. A-T 5400 BCC 42734 TBRC 5832 NBRC 109645 DSM 108650

NCBI tax ID(s) 1547892

Special Collections DSMZ Literature strains

History <- NBRC; NBRC 109645 <- C Suriyachadkun, BIOTEC; A-T 5400

Links

Actinoplanes subglobosus A-T 5400 is an aerobe, spore-forming, mesophilic prokaryote that was isolated from mixed deciduous forest soil.

spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397577

TBRC 5832,NBRC 109645,DSM 108650

@ref 20215

Last LPSN update 2026-02-09 11:31:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micromonosporales

Family Micromonosporaceae

Genus Actinoplanes

Species Actinoplanes subglobosus

Full scientific name Actinoplanes subglobosus Ngaemthao et al. 2016

Morphology

Cell morphology

24978

Gram stainpositive

Colony morphology

@ref	Colony color	Medium used
24978	light orange	Yeast extract-malt extract agar (ISP2)
24978	light orange yellow	Inorganic salts-starch agar (ISP4)
24978	vivid orange	Glycerol-asparagine agar (ISP5)

Multimedia

@ref:	64831
multimedia content:	DSM_108650.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_108650.jpg
caption:	Medium 535 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
24978	Yeast extract-malt extract agar (ISP2)
24978	Inorganic salts-starch agar (ISP4)
24978	Glycerol-asparagine agar (ISP5)
64831	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
64831	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
64831	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
64831	ISP2 MEDIUM (DSMZ Medium 987)	Medium recipe at MediaDive	Name: ISP 2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
64831	CZAPEK PEPTONE AGAR (DSMZ Medium 83)	Medium recipe at MediaDive	Name: CZAPEK PEPTONE AGAR (DSMZ Medium 83) Composition: Sucrose 30.0 g/l Agar 20.0 g/l Peptone 5.0 g/l NaNO3 3.0 g/l Yeast extract 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 0.5 g/l KCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24978	positive	growth	37	mesophilic
24978	positive	growth	20.0-37.0
24978	positive	optimum	25.0-30.0	mesophilic
64831	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
24978	positive	optimum	8.0-9.0
24978	positive	growth	6.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

24978

Oxygen toleranceaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
24978	motile	spore

Halophily

@ref	Salt	Tested relation	Concentration
24978	NaCl	maximum	1 %(w/v)

Murein

@ref	Murein short key	Type
24978	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24978	17057 ChEBI	cellobiose	+	assimilation
24978	18333 ChEBI	D-arabitol	-	assimilation
24978	15824 ChEBI	D-fructose	+	assimilation
24978	12936 ChEBI	D-galactose	+	assimilation
24978	17634 ChEBI	D-glucose	+	assimilation
24978	16899 ChEBI	D-mannitol	+	assimilation
24978	16024 ChEBI	D-mannose	+	assimilation
24978	16988 ChEBI	D-ribose	-	assimilation
24978	17924 ChEBI	D-sorbitol	-	assimilation
24978	65327 ChEBI	D-xylose	+	assimilation
24978	17754 ChEBI	glycerol	+	assimilation
24978	30849 ChEBI	L-arabinose	+	assimilation
24978	62345 ChEBI	L-rhamnose	+	assimilation
24978	17716 ChEBI	lactose	+	assimilation
24978	28053 ChEBI	melibiose	-	assimilation
24978	17268 ChEBI	myo-inositol	+	assimilation
24978	16634 ChEBI	raffinose	+	assimilation
24978	17814 ChEBI	salicin	+	assimilation
24978	27922 ChEBI	sorbose	-	assimilation
24978	17992 ChEBI	sucrose	+	assimilation
24978	27082 ChEBI	trehalose	+	assimilation
24978	17151 ChEBI	xylitol	-	assimilation

Enzymes

@ref	Value	Activity	Ec
24978	acid phosphatase	+	3.1.3.2
24978	alkaline phosphatase	+	3.1.3.1
24978	alpha-chymotrypsin	+	3.4.21.1
24978	alpha-glucosidase	+	3.2.1.20
24978	beta-galactosidase	-	3.2.1.23
24978	beta-glucosidase	+	3.2.1.21
24978	catalase	+	1.11.1.6
24978	cystine arylamidase	+	3.4.11.3
24978	esterase (C 4)	+
24978	esterase Lipase (C 8)	-
24978	leucine arylamidase	+	3.4.11.1
24978	N-acetyl-beta-glucosaminidase	-	3.2.1.52
24978	naphthol-AS-BI-phosphohydrolase	+
24978	trypsin	+	3.4.21.4
24978	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
24978	mixed deciduous forest soil	Lamphun Province	Thailand	THA	Asia	soil extract agar	supplemented with 25 mg l-1 nalidixic acid, 50 mg l-1 cycloheximide and 1 mg l-1 terbinafine	21 days	28
64831	mixed deciduous forest soil	Lamphun Province	Thailand	THA	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64831	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265058v1 assembly for Actinoplanes subglobosus TBRC 5832	scaffold	GCA_042650585	1547892	37.43

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64831	Actinoplanes subglobosus strain A-T 5400 16S ribosomal RNA gene, partial sequence	KM396265	1443		1547892

GC content

@ref	GC-content (mol%)	Method
24978	71	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinoplanes subglobosus sp. nov., isolated from mixed deciduous forest soil.	Ngaemthao W, Chunhametha S, Suriyachadkun C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001440	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24978	W. C. Ngaemthao, Suwanee,Suriyachadkun, Chanwit: Actinoplanes subglobosus sp. nov., isolated from mixed deciduous forest soil. IJSEM 66: 4850 - 4855 2016 ( DOI 10.1099/ijsem.0.001440 , PubMed 27550419 )
#64831	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 108650
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinoplanes subglobosus (A-T 5400, BCC 42734, TBRC 5832)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042650585

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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