Name: Mycobacterium oryzae JC290
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 133186

Type strain:

Species: Mycobacterium oryzae

Strain Designation: JC290

Culture col. no.: KCTC 39560, LMG 28809

NCBI tax ID(s): 1648871 (species)

Section

Mycobacterium oryzae JC290 is a mesophilic, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from paddy soil.

colony-forming
Gram-positive
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium oryzae**
	Full Scientific Name (PNU)	Mycobacterium oryzae Ramaprasad et al. 2016

Synonym

Mycolicibacterium oryzae

Information on morphological and physiological properties Morphology

[Ref.: #24969]	Gram stain	positive
[Ref.: #24969]	Cell length	1.4-2.0 µm
[Ref.: #24969]	Cell width	0.4-0.6 µm
[Ref.: #24969]	Cell shape	rod-shaped
[Ref.: #24969]	Motility	no

[Ref.: #24969]	Colony size	2.0-3.0 mm
[Ref.: #24969]	Colony color	dark orange
[Ref.: #24969]	Colony shape	circular
[Ref.: #24969]	Incubation period	3-5 days
[Ref.: #24969]	Cultivation medium used	TSA (Trypticase soy agar)

[Ref.: #24969]	Pigment production	yes
[Ref.: #24969]	Pigmentation color	beta-carotene
[Ref.: #24969]	Pigment name	Carotenoid

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24969]

Culture medium

Marine agar (MA)

[Ref.: #24969]

Culture medium growth

[Ref.: #24969]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #24969]

Culture medium growth

[Ref.: #24969]

Culture medium

TSA (Trypticase soy agar)

[Ref.: #24969]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #24969]			optimum	30 °C
[Ref.: #24969]			growth	25.0-45.0 °C

[Ref.: #24969]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24969]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24969]		NaCl		growth	0	%(w/v)
[Ref.: #24969]		NaCl	no	growth	>4.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24969]	acetate ChEBI	+	carbon source
[Ref.: #24969]	casein	-	hydrolysis
[Ref.: #24969]	cellobiose ChEBI	+	carbon source
[Ref.: #24969]	citrate ChEBI	+	carbon source
[Ref.: #24969]	D-fructose ChEBI	+	carbon source
[Ref.: #24969]	D-galactose ChEBI	-	carbon source
[Ref.: #24969]	D-glucose ChEBI	+	carbon source
[Ref.: #24969]	D-mannitol ChEBI	+	carbon source
[Ref.: #24969]	D-mannose ChEBI	+	carbon source
[Ref.: #24969]	D-sorbitol ChEBI	+	carbon source
[Ref.: #24969]	D-xylose ChEBI	+	carbon source
[Ref.: #24969]	fumarate ChEBI	+	carbon source
[Ref.: #24969]	L-arabinose ChEBI	-	carbon source
[Ref.: #24969]	L-malate ChEBI	+	carbon source
[Ref.: #24969]	L-rhamnose ChEBI	+	carbon source
[Ref.: #24969]	L-serine ChEBI	+	carbon source
[Ref.: #24969]	lactate ChEBI	+	carbon source
[Ref.: #24969]	myo-inositol ChEBI	+	carbon source
[Ref.: #24969]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #24969]	nitrate ChEBI	-	reduction
[Ref.: #24969]	pyruvate ChEBI	+	carbon source
[Ref.: #24969]	sucrose ChEBI	+	carbon source
[Ref.: #24969]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #24969]		catalase	+	1.11.1.6
[Ref.: #24969]		urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24969]	Sample type/isolated from	paddy soil
[Ref.: #24969]	Sampling date	2014-11-01
[Ref.: #24969]	Geographic location (country and/or sea, region)	Kankumbi,Western Ghats, Karnataka
[Ref.: #24969]	Country	India
[Ref.: #24969]	Country ISO 3 Code	IND
[Ref.: #24969]	Continent	Asia
[Ref.: #24969]	Geographic location	15.0000°/74.0000°
[Ref.: #24969]	Enrichment culture	R2A agar (Reasoner's 2A agar)
[Ref.: #24969]	Enrichment culture composition	containing (g l-1) yeast extract (0.5), peptone (0.5), casein enzyme hydrolysate (0.5), yeast extract (0.5), glucose (0.5), water-soluble starch (0.5), dipotassium phosphate (0.3), magnesium sulphate (0.05) and sodium pyruvate (0.3);pH 7.0
[Ref.: #24969]	Enrichment culture duration	5 days
[Ref.: #24969]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24969]	Mycobacterium sp. JC290 partial 16S rRNA gene, strain JC290	LN846834	1419	GenBank	1648871 tax ID

[Ref.: #24969]

GC-content

69.5-70.0 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24969]

Culture collection no.

KCTC 39560, LMG 28809

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium oryzae sp. nov., a scotochromogenic, rapidly growing species is able to infect human macrophage cell line.	Ramaprasad EVV, Rizvi A, Banerjee S, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001386	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24969

E. V. V. R. Ramaprasad, A.,Banerjee, S.,Sasikala, Ch.,Ramana, Ch. V.: Mycobacterium oryzae sp. nov., a scotochromogenic, rapidly growing species is able to infect human macrophage cell line. IJSEM 66: 4530 - 4536 2016 ( DOI 10.1099/ijsem.0.001386 , PubMed 27499106 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Mycobacterium oryzae in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF