Mycobacterium oryzae (JC290, KCTC 39560, LMG 28809)

Name: Mycobacterium oryzae (JC290, KCTC 39560, LMG 28809)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 133186

Type strain

Strain Designation JC290

Culture col. no. JC290 KCTC 39560 LMG 28809

NCBI tax ID(s) 1648871

Special Collections KCTC Literature strains

Links

Mycobacterium oryzae JC290 is a mesophilic, Gram-positive, rod-shaped prokaryote that forms circular colonies and was isolated from paddy soil.

Gram-positive rod-shaped colony-forming mesophilic 16S sequence

Name and taxonomic classification

SI-ID 390562

LMG 28809

@ref 20215

Last LPSN update 2025-12-16 10:01:42

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Mycobacteriaceae

Genus Mycobacterium

Species Mycobacterium oryzae

Full scientific name Mycobacterium oryzae Ramaprasad et al. 2016

Synonyms (1)

Mycolicibacterium oryzae

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
24969	positive	1.4-2.0 µm	0.4-0.6 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
24969	2.0-3.0 mm	dark orange	circular	3-5 days	TSA (Trypticase soy agar)

Pigmentation

@ref	Production	Color	Name
24969		beta-carotene	Carotenoid

Culture and growth conditions

Culture medium

@ref	Name	Growth
24969	Marine agar (MA)
24969	Reasoner's 2A agar (R2A)
24969	TSA (Trypticase soy agar)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24969	positive	optimum	30	mesophilic
24969	positive	growth	25.0-45.0

Physiology and metabolism

Spore formation

24969

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
24969	NaCl	positive	growth	0 %(w/v)
24969	NaCl		growth	>4.0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24969	30089 ChEBI	acetate	+	carbon source
24969		casein	-	hydrolysis
24969	17057 ChEBI	cellobiose	+	carbon source
24969	16947 ChEBI	citrate	+	carbon source
24969	15824 ChEBI	D-fructose	+	carbon source
24969	12936 ChEBI	D-galactose	-	carbon source
24969	17634 ChEBI	D-glucose	+	carbon source
24969	16899 ChEBI	D-mannitol	+	carbon source
24969	16024 ChEBI	D-mannose	+	carbon source
24969	17924 ChEBI	D-sorbitol	+	carbon source
24969	65327 ChEBI	D-xylose	+	carbon source
24969	29806 ChEBI	fumarate	+	carbon source
24969	30849 ChEBI	L-arabinose	-	carbon source
24969	15589 ChEBI	L-malate	+	carbon source
24969	62345 ChEBI	L-rhamnose	+	carbon source
24969	17115 ChEBI	L-serine	+	carbon source
24969	24996 ChEBI	lactate	+	carbon source
24969	17268 ChEBI	myo-inositol	+	carbon source
24969	506227 ChEBI	N-acetylglucosamine	+	carbon source
24969	17632 ChEBI	nitrate	-	reduction
24969	15361 ChEBI	pyruvate	+	carbon source
24969	17992 ChEBI	sucrose	+	carbon source
24969	53426 ChEBI	tween 80	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
24969	catalase	+	1.11.1.6
24969	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Engineered	#Agriculture	#Field
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Condition	#Anoxic (anaerobic)	-
#Condition	#Humid	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
24969	paddy soil	2014-11-01	Kankumbi,Western Ghats, Karnataka	India	IND	Asia	15	74 15/74	R2A agar (Reasoner's 2A agar)	containing (g l-1) yeast extract (0.5), peptone (0.5), casein enzyme hydrolysate (0.5), yeast extract (0.5), glucose (0.5), water-soluble starch (0.5), dipotassium phosphate (0.3), magnesium sulphate (0.05) and sodium pyruvate (0.3);pH 7.0	5 days	30

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24969	Mycobacterium sp. JC290 partial 16S rRNA gene, strain JC290	LN846834	1419		1648871

GC content

@ref	GC-content (mol%)	Method
24969	69.5-70.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera.	Gupta RS, Lo B, Son J.	Front Microbiol	10.3389/fmicb.2018.00067	2018
Phylogeny	Mycobacterium oryzae sp. nov., a scotochromogenic, rapidly growing species is able to infect human macrophage cell line.	Ramaprasad EVV, Rizvi A, Banerjee S, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001386	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24969	E. V. V. R. Ramaprasad, A.,Banerjee, S.,Sasikala, Ch.,Ramana, Ch. V.: Mycobacterium oryzae sp. nov., a scotochromogenic, rapidly growing species is able to infect human macrophage cell line. IJSEM 66: 4530 - 4536 2016 ( DOI 10.1099/ijsem.0.001386 , PubMed 27499106 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Mycobacterium oryzae (JC290, KCTC 39560, LMG 28809)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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