Name: Lacinutrix cladophorae 7Alg 4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 133188

Type strain:

Species: Lacinutrix cladophorae

Strain Designation: 7Alg 4

Culture col. no.: KCTC 23036, KMM 6381

Strain history: <- OI Nedashkovskaya, Pacific Institute of Bioorganic Chemistry, Russia

NCBI tax ID(s): 1778903 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Lacinutrix cladophorae 7Alg 4 is an obligate aerobe, chemoheterotroph, Gram-negative bacterium that forms circular colonies and has a yellow pigmentation.

colony-forming
Gram-negative
motile
pigmented
rod-shaped
chemoheterotroph
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lacinutrix*
	Species	**Lacinutrix cladophorae**
	Full Scientific Name (LPSN)	Lacinutrix cladophorae Nedashkovskaya et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24984]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #24984]	Cell length	1.2-2.3 µm

[Ref.: #24984]	Cell width	0.4-0.5 µm

[Ref.: #24984]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #24984]	Motility	yes
[Ref.: #67771]	Motility	yes

[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #24984]	Colony size	2.0-3.0 mm
[Ref.: #24984]	Colony color	yellow
[Ref.: #24984]	Colony shape	circular
[Ref.: #24984]	Cultivation medium used	MA (marine agar)

[Ref.: #24984]	Pigment production	yes
[Ref.: #24984]	Pigmentation color	yellow
[Ref.: #24984]	Pigment production	yes
[Ref.: #24984]	Pigment name	Flexirubin-type

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24984]

Culture medium

Marine agar (MA)

[Ref.: #24984]

Culture medium growth

		Temperature
[Ref.: #24984]	growth	4.0-32.0 °C
[Ref.: #24984]	optimum	25.0-28.0 °C
[Ref.: #67771]	growth	25-28 °C

	pH	Kind of pH		pH
[Ref.: #24984]			optimum	7.5
[Ref.: #24984]			growth	5.5-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24984]	Oxygen tolerance	obligate aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #24984]

Nutrition type

chemoheterotroph

[Ref.: #24984]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24984]		NaCl		growth	1.0-5.0	%
[Ref.: #24984]		NaCl		optimum	2.5-4.0	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24984]	agar ChEBI	-	hydrolysis
[Ref.: #24984]	casein	-	hydrolysis
[Ref.: #24984]	cellobiose ChEBI	-	builds acid from
[Ref.: #24984]	chitin ChEBI	-	hydrolysis
[Ref.: #24984]	citrate ChEBI	-	builds acid from
[Ref.: #24984]	citrate ChEBI	-	carbon source
[Ref.: #24984]	D-fructose ChEBI	-	builds acid from
[Ref.: #24984]	D-galactose ChEBI	-	builds acid from
[Ref.: #24984]	D-glucose ChEBI	-	builds acid from
[Ref.: #24984]	D-glucose ChEBI	+	carbon source
[Ref.: #24984]	D-mannitol ChEBI	+	builds acid from
[Ref.: #24984]	D-mannose ChEBI	-	builds acid from
[Ref.: #24984]	D-mannose ChEBI	+	carbon source
[Ref.: #24984]	D-xylose ChEBI	-	builds acid from
[Ref.: #24984]	dna ChEBI	-	hydrolysis
[Ref.: #24984]	esculin ChEBI	+	hydrolysis
[Ref.: #24984]	gelatin ChEBI	+	hydrolysis
[Ref.: #24984]	gluconate ChEBI	-	carbon source
[Ref.: #24984]	glycerol ChEBI	-	builds acid from
[Ref.: #24984]	L-arabinose ChEBI	-	builds acid from
[Ref.: #24984]	L-arabinose ChEBI	+	carbon source
[Ref.: #24984]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #24984]	lactose ChEBI	-	builds acid from
[Ref.: #24984]	lactose ChEBI	+	carbon source
[Ref.: #24984]	maltose ChEBI	+	builds acid from
[Ref.: #24984]	maltose ChEBI	+	carbon source
[Ref.: #24984]	mannitol ChEBI	+	carbon source
[Ref.: #24984]	mannose ChEBI	+	carbon source
[Ref.: #24984]	melibiose ChEBI	-	builds acid from
[Ref.: #24984]	myo-inositol ChEBI	-	builds acid from
[Ref.: #24984]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #24984]	nitrate ChEBI	-	reduction
[Ref.: #24984]	raffinose ChEBI	-	builds acid from
[Ref.: #24984]	ribose ChEBI	-	builds acid from
[Ref.: #24984]	sorbitol ChEBI	-	builds acid from
[Ref.: #24984]	sorbitol ChEBI	+	carbon source
[Ref.: #24984]	starch ChEBI	+	hydrolysis
[Ref.: #24984]	sucrose ChEBI	-	builds acid from
[Ref.: #24984]	sucrose ChEBI	+	carbon source
[Ref.: #24984]	trehalose ChEBI	-	builds acid from
[Ref.: #24984]	tryptophan ChEBI	-	energy source
[Ref.: #24984]	tween 20 ChEBI	-	hydrolysis
[Ref.: #24984]	tween 40 ChEBI	-	hydrolysis
[Ref.: #24984]	tween 80 ChEBI	+	hydrolysis
[Ref.: #24984]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #24984]	ampicillin ChEBI	no
[Ref.: #24984]	carbenicillin ChEBI	yes
[Ref.: #24984]	cefazolin ChEBI	no
[Ref.: #24984]	cephalexin ChEBI	yes
[Ref.: #24984]	chloramphenicol ChEBI	yes
[Ref.: #24984]	doxycycline ChEBI	yes
[Ref.: #24984]	erythromycin ChEBI	yes
[Ref.: #24984]	gentamicin ChEBI	no
[Ref.: #24984]	kanamycin ChEBI		yes
[Ref.: #24984]	lincomycin ChEBI	yes
[Ref.: #24984]	nalidixic acid ChEBI	yes
[Ref.: #24984]	neomycin ChEBI	no
[Ref.: #24984]	ofloxacin ChEBI	yes
[Ref.: #24984]	oleandomycin ChEBI	yes
[Ref.: #24984]	oxacillin ChEBI	no
[Ref.: #24984]	penicillin g ChEBI	no
[Ref.: #24984]	polymyxin ChEBI		yes
[Ref.: #24984]	rifampicin ChEBI	yes
[Ref.: #24984]	streptomycin ChEBI	no
[Ref.: #24984]	tetracycline ChEBI	no
[Ref.: #24984]	vancomycin ChEBI	yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #24984]	acetoin ChEBI	no
[Ref.: #24984]	hydrogen sulfide ChEBI	no
[Ref.: #24984]	indole ChEBI	no

	Physiological tests	Metabolite	Indole test	Citrate test
[Ref.: #24984]		citrate ChEBI		-
[Ref.: #24984]		indole ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #24984]	acid phosphatase	+	3.1.3.2
[Ref.: #24984]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24984]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #24984]	alpha-fucosidase	-	3.2.1.51
[Ref.: #24984]	alpha-galactosidase	-	3.2.1.22
[Ref.: #24984]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24984]	alpha-mannosidase	-	3.2.1.24
[Ref.: #24984]	arginine dihydrolase	-	3.5.3.6
[Ref.: #24984]	beta-galactosidase	-	3.2.1.23
[Ref.: #24984]	beta-glucosidase	-	3.2.1.21
[Ref.: #24984]	beta-glucuronidase	-	3.2.1.31
[Ref.: #24984]	catalase	+	1.11.1.6
[Ref.: #24984]	cystine arylamidase	+	3.4.11.3
[Ref.: #24984]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24984]	esterase (C 4)	+
[Ref.: #24984]	esterase Lipase (C 8)	+
[Ref.: #24984]	leucine arylamidase	+	3.4.11.1
[Ref.: #24984]	lipase (C 14)	-
[Ref.: #24984]	lysine decarboxylase	-	4.1.1.18
[Ref.: #24984]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #24984]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #24984]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #24984]	trypsin	-	3.4.21.4
[Ref.: #24984]	tryptophan deaminase	-	4.1.99.1
[Ref.: #24984]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24984]	Sample type/isolated from	green alga Cladophora stimpsonii
[Ref.: #24984]	Geographic location (country and/or sea, region)	Troitsa Bay, Gulf of Peter the Great, Sea of Japan (also is known as East Sea), Pacific Ocean, Russia
[Ref.: #24984]	Country	Russia
[Ref.: #24984]	Country ISO 3 Code	RUS
[Ref.: #24984]	Continent	Asia
[Ref.: #24984]	Geographic location	42.0000°/134.0000°

[Ref.: #67771]	Sample type/isolated from	From the green alga `Cladophora stimpsonii`
[Ref.: #67771]	Geographic location (country and/or sea, region)	Troitsa Bay, Gulf of Peter the Great, East Sea(Sea of Japan), Pacific Ocean
[Ref.: #67771]	Country	Russia
[Ref.: #67771]	Country ISO 3 Code	RUS
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host

#Algae

#Green algae

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24984]	Lacinutrix cladophorae 16S ribosomal RNA gene, partial sequence	KU510085	1478	GenBank ENA	1778903 tax ID

[Ref.: #24984]	GC-content	31.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67771]	GC-content	31.9 mol%

Availability in culture collections External links

[Ref.: #24984]

Culture collection no.

KCTC 23036, KMM 6381

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lacinutrix cladophorae sp. nov., a flavobacterium isolated from the green alga Cladophora stimpsonii, transfer of Flavirhabdus iliipiscaria Shakeela et al. 2015 to the genus Lacinutrix as Lacinutrix iliipiscaria comb. nov. and emended description of the genus Lacinutrix.	Nedashkovskaya OI, Kim SG, Zhukova NV, Lee JS, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001353	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24984

O. I. K. Nedashkovskaya, Song-Gun,Zhukova, Natalia V.,Lee, Jung-Sook,Mikhailov, Valery V.: Lacinutrix cladophorae sp. nov., a flavobacterium isolated from the green alga Cladophora stimpsonii, transfer of Flavirhabdus iliipiscaria Shakeela et al. 2015 to the genus Lacinutrix as Lacinutrix iliipiscaria comb. nov. and emended description of the genus Lacinutrix. IJSEM 66: 4339 - 4346 2016 ( DOI 10.1099/ijsem.0.001353 , PubMed 27473360 )

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
* These data were automatically processed and therefore are not curated

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