Name: Desulfurococcus amylolyticus DSM 3822
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132728

Type strain:

Species: Desulfurococcus amylolyticus

Culture col. no.: DSM 3822, JCM 9188

Strain history: DSM 3822 <-- E. A. Bonch-Osmolovskaya Z-533.

NCBI tax ID(s): 1150674 (strain), 94694 (species)

SI-ID 47764

DSM 3822, JCM 9188

Special Collections

DSMZ
JCM

Other strains from Desulfurococcus amylolyticus

Section

Desulfurococcus amylolyticus DSM 3822 is an archaeon that was isolated from hot spring.

16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Thermoproteota*
	Class	*Thermoprotei*
	Order	*Desulfurococcales*
	Family	*Desulfurococcaceae*
	Genus	*Desulfurococcus*
	Species	**Desulfurococcus amylolyticus**
	Full Scientific Name (LPSN)	Desulfurococcus amylolyticus Bonch-Osmolovskaya et al. 2001

	Synonym	Desulfurococcus fermentans
	Synonym	Desulfurococcus kamchatkensis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24518]

Culture medium

DESULFUROCOCCUS MEDIUM (DSMZ Medium 395)

[Ref.: #24518]

Culture medium growth

[Ref.: #24518]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24518]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24518]			growth	90 °C
[Ref.: #67770]			growth	90 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24518]	Sample type/isolated from	hot spring
[Ref.: #24518]	Geographic location (country and/or sea, region)	Kamchatka
[Ref.: #24518]	Country	USSR
[Ref.: #24518]	Country ISO 3 Code	RUS
[Ref.: #24518]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Thermal spring of Kamchatka and Kunashir Island
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24518]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24518]	Desulfurococcus amylolyticus 16S ribosomal RNA gene, partial sequence	AF250331	1405	GenBank ENA	1150674 tax ID
[Ref.: #67770]	Desulfurococcus amylolyticus gene for 16S rRNA, partial sequence, strain: JCM 9188	AB661712	1461	GenBank ENA	1150674 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Desulfurococcus amylolyticus DSM 3822	2516143104	draft	JGI IMG/M	1150674 tax ID	*

[Ref.: #24518]	GC-content	41.2 mol%
[Ref.: #24518]	GC-content	45.2 mol%	sequence analysis
[Ref.: #67770]	GC-content	41 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	43.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24518]

Culture collection no.

DSM 3822, JCM 9188

[Ref.: #91032]

SI-ID 47764

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	GH57 amylopullulanase from Desulfurococcus amylolyticus JCM 9188 can make highly branched cyclodextrin via its transglycosylation activity.	Park YU, Jung JH, Seo DH, Jung DH, Kim JH, Seo EJ, Baek NI, Park CS	Enzyme Microb Technol	10.1016/j.enzmictec.2018.03.005	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24518

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3822

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#91032

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47764.1 )

* These data were automatically processed and therefore are not curated

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