Strain identifier

BacDive ID: 132728

Type strain: Yes

Species: Desulfurococcus amylolyticus

Strain history: DSM 3822 <-- E. A. Bonch-Osmolovskaya Z-533.

NCBI tax ID(s): 1150674 (strain), 94694 (species)

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General

@ref: 24518

BacDive-ID: 132728

DSM-Number: 3822

keywords: genome sequence, 16S sequence, Archaea

description: Desulfurococcus amylolyticus DSM 3822 is an archaeon that was isolated from hot spring.

NCBI tax id

NCBI tax idMatching level
94694species
1150674strain

strain history

@refhistory
24518<- E. Bonch-Osmolovskaya, Z-533
67770DSM 3822 <-- E. A. Bonch-Osmolovskaya Z-533.

doi: 10.13145/bacdive132728.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/thermoproteota
  • domain: Archaea
  • phylum: Thermoproteota
  • class: Thermoprotei
  • order: Desulfurococcales
  • family: Desulfurococcaceae
  • genus: Desulfurococcus
  • species: Desulfurococcus amylolyticus
  • full scientific name: Desulfurococcus amylolyticus Bonch-Osmolovskaya et al. 2001

  • synonyms

    @refsynonym
    20215Desulfurococcus fermentans
    20215Desulfurococcus kamchatkensis

@ref: 24518

domain: Archaea

phylum: Crenarchaeota

class: Thermoprotei

order: Desulfurococcales

family: Desulfurococcaceae

genus: Desulfurococcus

species: Desulfurococcus amylolyticus

full scientific name: Desulfurococcus amylolyticus Bonch-Osmolovskaya et al. 2001 emend. Perevalova et al. 2016

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24518
  • name: DESULFUROCOCCUS MEDIUM (DSMZ Medium 395)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/395
  • composition: Name: DESULFUROCOCCUS MEDIUM (DSMZ Medium 395) Composition: Sulfur 9.98004 g/l D-Glucose 2.49501 g/l MgCl2 x 6 H2O 0.698603 g/l Na2S x 9 H2O 0.499002 g/l NaCl 0.499002 g/l CaCl2 x 2 H2O 0.439122 g/l KCl 0.329341 g/l KH2PO4 0.329341 g/l NH4Cl 0.329341 g/l Yeast extract 0.199601 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

culture temp

@refgrowthtypetemperature
24518positivegrowth90
67770positivegrowth90

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24518hot springKamchatkaUSSRRUSAsia
67770Thermal spring of Kamchatka and Kunashir Island

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 24518
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
24518Desulfurococcus amylolyticus 16S ribosomal RNA gene, partial sequenceAF2503311405nuccore1150674
67770Desulfurococcus amylolyticus gene for 16S rRNA, partial sequence, strain: JCM 9188AB6617121461nuccore1150674

Genome sequences

  • @ref: 66792
  • description: Desulfurococcus amylolyticus DSM 3822
  • accession: 2516143104
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1150674

GC content

@refGC-contentmethod
2451841.2
2451845.2sequence analysis
6777041thermal denaturation, midpoint method (Tm)
6777043.2high performance liquid chromatography (HPLC)

External links

@ref: 24518

culture collection no.: DSM 3822, JCM 9188

straininfo link

  • @ref: 91032
  • straininfo: 47764

literature

  • topic: Metabolism
  • Pubmed-ID: 29685348
  • title: GH57 amylopullulanase from Desulfurococcus amylolyticus JCM 9188 can make highly branched cyclodextrin via its transglycosylation activity.
  • authors: Park YU, Jung JH, Seo DH, Jung DH, Kim JH, Seo EJ, Baek NI, Park CS
  • journal: Enzyme Microb Technol
  • DOI: 10.1016/j.enzmictec.2018.03.005
  • year: 2018
  • mesh: Archaeal Proteins/*chemistry/genetics/metabolism, Cloning, Molecular, Cyclodextrins/chemistry/*metabolism, Desulfurococcaceae/chemistry/*enzymology/genetics, Enzyme Stability, Glucans/metabolism, Glycoside Hydrolases/*chemistry/genetics/metabolism, Glycosylation, Maltose/analogs & derivatives/chemistry/metabolism, Molecular Weight, Open Reading Frames, Substrate Specificity, Trisaccharides/metabolism
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24518Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-3822Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3822)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
91032Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID47764.1