Name: Jatrophihabitans huperziae I13A-01604
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132631

Type strain:

Species: Jatrophihabitans huperziae

Strain Designation: I13A-01604

Culture col. no.: DSM 46866, CPCC 204076, NBRC 110718

Strain history: <- Y.-Q. Zhang; CPCC 204076 <- H.-M. Sun, Chinese Academy of Medical Sciences & Peking Union Medical College, China

NCBI tax ID(s): 1730378 (species)

SI-ID 405482

DSM 46866

Special Collections

Section

Jatrophihabitans huperziae I13A-01604 is a Gram-positive, rod-shaped bacterium that was isolated from surface-sterilized tissue of the medicinal plant Huperzia serrata .

Gram-positive
rod-shaped
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Jatrophihabitantales*
	Family	*Jatrophihabitantaceae*
	Genus	*Jatrophihabitans*
	Species	**Jatrophihabitans huperziae**
	Full Scientific Name (LPSN)	Jatrophihabitans huperziae Gong et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24895]	Gram stain	positive

[Ref.: #24895]	Cell length	1.0-1.1 µm

[Ref.: #24895]	Cell width	0.5-0.7 µm

[Ref.: #24895]	Cell shape	rod-shaped

[Ref.: #24895]	Motility	no

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Colony color

soft orange

Multimedia content

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Caption:

Medium 535 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24420]	growth	28 °C
[Ref.: #24895]	growth	10-37 °C
[Ref.: #24895]	optimum	32 °C

	pH	Kind of pH		pH
[Ref.: #24895]			optimum	7.0-7.5
[Ref.: #24895]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24895]		NaCl		growth	0-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24895]	acetate ChEBI	+	respiration
[Ref.: #24895]	acetoacetate ChEBI	+	respiration
[Ref.: #24895]	alpha-D-glucose ChEBI	+	respiration
[Ref.: #24895]	alpha-lactose ChEBI	+	respiration
[Ref.: #24895]	cellobiose ChEBI	+	respiration
[Ref.: #24895]	cellulose ChEBI	-	hydrolysis
[Ref.: #24895]	citrate ChEBI	+	respiration
[Ref.: #24895]	D-arabitol ChEBI	+	respiration
[Ref.: #24895]	D-aspartate ChEBI	+	respiration
[Ref.: #24895]	D-fructose ChEBI	+	respiration
[Ref.: #24895]	D-fructose 6-phosphate ChEBI	+	respiration
[Ref.: #24895]	D-fucose ChEBI	+	respiration
[Ref.: #24895]	D-galactose ChEBI	+	respiration
[Ref.: #24895]	D-galacturonic acid ChEBI	+	respiration
[Ref.: #24895]	D-gluconate ChEBI	+	respiration
[Ref.: #24895]	D-glucose 6-phosphate ChEBI	+	respiration
[Ref.: #24895]	D-glucuronate ChEBI	+	respiration
[Ref.: #24895]	D-malate ChEBI	+	respiration
[Ref.: #24895]	D-mannitol ChEBI	+	respiration
[Ref.: #24895]	D-mannose ChEBI	+	respiration
[Ref.: #24895]	D-sorbitol ChEBI	+	respiration
[Ref.: #24895]	gelatin ChEBI	-	hydrolysis
[Ref.: #24895]	gentiobiose ChEBI	+	respiration
[Ref.: #24895]	glucose ChEBI	-	fermentation
[Ref.: #24895]	glucuronamide ChEBI	+	respiration
[Ref.: #24895]	glycerol ChEBI	+	respiration
[Ref.: #24895]	L-alanine ChEBI	+	respiration
[Ref.: #24895]	L-arginine ChEBI	+	respiration
[Ref.: #24895]	L-serine ChEBI	+	respiration
[Ref.: #24895]	maltose ChEBI	+	respiration
[Ref.: #24895]	melibiose ChEBI	+	respiration
[Ref.: #24895]	methyl (R)-lactate ChEBI	+	respiration
[Ref.: #24895]	starch ChEBI	+	hydrolysis
[Ref.: #24895]	tryptophan ChEBI	-	energy source
[Ref.: #24895]	tween 40 ChEBI	+	hydrolysis
[Ref.: #24895]	tween 40 ChEBI	+	respiration
[Ref.: #24895]	tween 80 ChEBI	+	hydrolysis
[Ref.: #24895]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic resistance	Concentration
[Ref.: #24895]	amikacin ChEBI	yes	30	µg/mL
[Ref.: #24895]	ampicillin ChEBI	yes	10	µg/mL
[Ref.: #24895]	aztreonam ChEBI	yes	30	µg/mL
[Ref.: #24895]	erythromycin ChEBI	yes	15	µg/mL
[Ref.: #24895]	gentamicin ChEBI	yes	10	µg/mL
[Ref.: #24895]	kanamycin ChEBI	yes	100	µg/mL
[Ref.: #24895]	penicillin g ChEBI	yes	10	Unit
[Ref.: #24895]	streptomycin ChEBI	yes	10	µg/mL
[Ref.: #24895]	tobramycin ChEBI	yes	10	µg/mL

	Metabolite production	Metabolite	Production
[Ref.: #24895]		acetoin ChEBI	no
[Ref.: #24895]		indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #24895]	acetoin ChEBI	-
[Ref.: #24895]	glucose ChEBI		-
[Ref.: #24895]	indole ChEBI			-

	Enzyme	Enzyme activity	EC number
[Ref.: #24895]	acid phosphatase	+	3.1.3.2
[Ref.: #24895]	alkaline phosphatase	+	3.1.3.1
[Ref.: #24895]	alpha-glucosidase	+	3.2.1.20
[Ref.: #24895]	beta-glucuronidase	+	3.2.1.31
[Ref.: #24895]	catalase	-	1.11.1.6
[Ref.: #24895]	cytochrome oxidase	+	1.9.3.1
[Ref.: #24895]	esterase (C 4)	+
[Ref.: #24895]	esterase lipase (C 8)	+
[Ref.: #24895]	leucine arylamidase	+	3.4.11.1
[Ref.: #24895]	tryptophan deaminase	-	4.1.99.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24420]	Sample type/isolated from	surface-sterilized tissue of the medicinal plant Huperzia serrata (Thunb.)
[Ref.: #24420]	Host species	Huperzia serrata
[Ref.: #24420]	Geographic location (country and/or sea, region)	Sichuan province, Hongya County, Emeishan area of (29° 41' 24.98'' N 103° 10' 16.23'' E, 1187 m altitude)
[Ref.: #24420]	Country	China
[Ref.: #24420]	Country ISO 3 Code	CHN
[Ref.: #24420]	Continent	Asia
[Ref.: #24420]	Geographic location	29.6903°/103.1710°
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24420]	Jatrophihabitans huperziae strain I13A-01604 16S ribosomal RNA gene, partial sequence	KR184574	1493	GenBank ENA	1730378 tax ID

[Ref.: #24895]	GC-content	71.9 mol%	Thermal denaturation, fluorometry
[Ref.: #24420]	GC-content	71.9 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

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Culture collection no.

DSM 46866, CPCC 204076, NBRC 110718

[Ref.: #90945]

SI-ID 405482

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jatrophihabitans huperziae sp. nov., an endophytic actinobacterium isolated from surface-sterilized tissue of the medicinal plant Huperzia serrata (Thunb.).	Gong ZL, Ai MJ, Sun HM, Liu HY, Yu LY, Zhang YQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001296	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24420

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46866

#24895

Z.-L. A. Gong, Meng-Jie,Sun, Hong-Min,Liu, Hong-Yu,Yu, Li-Yan,Zhang, Yu-Qin: Jatrophihabitans huperziae sp. nov., an endophytic actinobacterium isolated from surface-sterilized tissue of the medicinal plant Huperzia serrata (Thunb.). IJSEM 66: 3972 - 3977 2016 ( DOI 10.1099/ijsem.0.001296 , PubMed 27413046 )

#90945

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405482.1 )

* These data were automatically processed and therefore are not curated

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