Lipingzhangella halophila (DSM 102030, CGMCC 4.7224, EGI 80537)

Name: Lipingzhangella halophila (DSM 102030, CGMCC 4.7224, EGI 80537)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132632

Type strain

Culture col. no. DSM 102030 CGMCC 4.7224 EGI 80537

NCBI tax ID(s) 1783352

Special Collections DSMZ Literature strains

Links

Lipingzhangella halophila DSM 102030 is a halophilic, Gram-positive prokaryote that was isolated from saline-alkaline desert soil.

Gram-positive halophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 400381

DSM 102030

@ref 20215

Last LPSN update 2025-12-16 10:01:34

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Nocardiopsidaceae

Genus Lipingzhangella

Species Lipingzhangella halophila

Full scientific name Lipingzhangella halophila Zhang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
24898	positive
125438		91
125439	positive	99.8
125439		93.8

Multimedia

@ref:	24421
multimedia content:	DSM_102030.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_102030.jpg
caption:	Medium 1159 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24421	GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24421	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24421	positive	growth	37	mesophilic
24898	positive	growth	15.0-40.0
24898	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
24898	positive	optimum	9.0-10.0
24898	positive	growth	7.0-11.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.7

Spore formation

24898

Spore formationno

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
24898	halophilic	NaCl	positive	growth	4.0-18.0 %(w/v)
24898		NaCl		optimum	5.0-7.0 %(w/v)

Murein

@ref	Murein short key	Type
24898	A31	A1gamma m-Dpm-direct

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24898	16708 ChEBI	adenine	-	nitrogen source
24898		casein	-	hydrolysis
24898	17057 ChEBI	cellobiose	+	carbon source
24898	62968 ChEBI	cellulose	-	hydrolysis
24898	17108 ChEBI	D-arabinose	-	carbon source
24898	12936 ChEBI	D-galactose	-	carbon source
24898	17634 ChEBI	D-glucose	+	carbon source
24898	16899 ChEBI	D-mannitol	+	carbon source
24898	16024 ChEBI	D-mannose	-	carbon source
24898	16988 ChEBI	D-ribose	-	carbon source
24898	65327 ChEBI	D-xylose	-	carbon source
24898	16813 ChEBI	galactitol	+	carbon source
24898	17754 ChEBI	glycerol	+	carbon source
24898	15428 ChEBI	glycine	-	nitrogen source
24898	73804 ChEBI	glycyl L-aspartic acid	+	nitrogen source
24898	73784 ChEBI	glycyl-l-glutamate	+	nitrogen source
24898	16977 ChEBI	L-alanine	+	nitrogen source
24898	30849 ChEBI	L-arabinose	-	carbon source
24898	16467 ChEBI	L-arginine	+	nitrogen source
24898	17196 ChEBI	L-asparagine	+	nitrogen source
24898	17561 ChEBI	L-cysteine	-	nitrogen source
24898	18050 ChEBI	L-glutamine	+	nitrogen source
24898	15971 ChEBI	L-histidine	+	nitrogen source
24898	18019 ChEBI	L-lysine	+	nitrogen source
24898	16643 ChEBI	L-methionine	+	nitrogen source
24898	17295 ChEBI	L-phenylalanine	+	nitrogen source
24898	17203 ChEBI	L-proline	+	nitrogen source
24898	62345 ChEBI	L-rhamnose	-	carbon source
24898	17115 ChEBI	L-serine	+	nitrogen source
24898	16857 ChEBI	L-threonine	+	nitrogen source
24898	16828 ChEBI	L-tryptophan	-	nitrogen source
24898	16414 ChEBI	L-valine	+	nitrogen source
24898	28053 ChEBI	melibiose	+	carbon source
24898	17268 ChEBI	myo-inositol	+	carbon source
24898	17632 ChEBI	nitrate	-	reduction
24898	16634 ChEBI	raffinose	+	carbon source
24898	32954 ChEBI	sodium acetate	+	carbon source
24898	50144 ChEBI	sodium pyruvate	+	carbon source
24898	17992 ChEBI	sucrose	+	carbon source
24898	27082 ChEBI	trehalose	+	carbon source
24898	53424 ChEBI	tween 20	-	hydrolysis
24898	53423 ChEBI	tween 40	-	hydrolysis
24898	53425 ChEBI	tween 60	-	hydrolysis
24898	53426 ChEBI	tween 80	-	hydrolysis
24898	15318 ChEBI	xanthine	+	nitrogen source
24898	17151 ChEBI	xylitol	-	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
24898	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
24898	catalase	+	1.11.1.6
24898	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
24421	saline-alkaline desert soil	Xinjiang, Gurbantünggüt desert, Karamay	China	CHN	Asia
24898						marine agar 2216	modified with addition of 2 % NaCl (w/v) and adjusting pH to 10.0 with autoclaved 10 M NaOH	28 days	30	dilution plating method

Taxonmaps

69479

Global distribution of 16S sequence KU042077 (>99% sequence identity) for Lipingzhangella halophila subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	43
Animal Samples	10
Plant Samples
Total Samples	55

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24421	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420380v1 assembly for Lipingzhangella halophila DSM 102030	contig	GCA_014203805	1783352.3	2863364417	1783352	72.66

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24421	Lipingzhangella halophila strain EGI 80537 16S ribosomal RNA gene, partial sequence	KU042077	1528		1783352

GC content

@ref	GC-content (mol%)	Method
24421	67.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lipingzhangella halophila DSM 102030
NCBI: GCA_014203805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.70	no
125439	motility	BacteriaNetⓘ	no	93.80	no
125439	gram_stain	BacteriaNetⓘ	positive	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lipingzhangella halophila strain DSM 102030
PATRIC: 1783352.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.59	no
125438	anaerobic	anaerobicⓘ	no	97.57	no
125438	spore-forming	spore-formingⓘ	yes	65.21	yes
125438	aerobic	aerobicⓘ	yes	88.70	no
125438	thermophilic	thermophileⓘ	no	91.53	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halostreptopolyspora alba gen. nov., sp. nov., a halophilic actinobacterium isolated from saline soil of Xinjiang, Northwest of China.	Li R, Tang XJ, Feng YZ, Ji Y, Wang Y, Miao CP, Tang M, Wang KK, Chunyu WX, Zhao LX, Tang SK.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006484	2024
Genetics	Lipingzhangella rawalii sp. nov., a novel halophile isolated from Sambhar Salt Lake, Rajasthan, India.	Jiya N, Kajale S, Kaldate A, Khudai W, Gupta B, Oza Y, Sharma A.	Arch Microbiol	10.1007/s00203-023-03757-9	2023
Phylogeny	Spiractinospora alimapuensis gen. nov., sp. nov., isolated from marine sediment of Valparaíso Bay (Chile) and proposal for reclassification of two species of the genus Nocardiopsis.	Claverias FP, Serna-Cardona N, Cumsille A, Zamora-Leiva L, Riesco R, Couve E, Trujillo ME, Camara B.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005207	2022
Phylogeny	Lipingzhangella halophila gen. nov., sp. nov., a new member of the family Nocardiopsaceae.	Zhang YG, Lu XH, Ding YB, Wang SJ, Zhou XK, Wang HF, Guo JW, Liu YH, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001312	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24421	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102030
#24898	Y.-G. L. Zhang, Xin-Hua,Ding, Yan-Bo,Wang, Su-Juan,Zhou, Xing-Kui,Wang, Hong-Fei,Guo, Jian-Wei,Liu, Yong-Hong,Duan, Yan-Qing,Li, Wen-Jun: Lipingzhangella halophila gen. nov., sp. nov., a new member of the family Nocardiopsaceae. IJSEM 66: 4071 - 4076 2016 ( DOI 10.1099/ijsem.0.001312 , PubMed 27412719 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lipingzhangella halophila (DSM 102030, CGMCC 4.7224, EGI 80537)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014203805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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