Name: Lipingzhangella halophila DSM 102030
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132632

Type strain:

Species: Lipingzhangella halophila

Culture col. no.: DSM 102030, CGMCC 4.7224, EGI 80537

Strain history: <- Y. Zhang, Xinjiang Inst. of Ecol. and Geography (XIEG), Chin. Acad. of Scs., Urumqi, China; EGI 80537 <- Wen-Jun Li <- Yongguang Zhang

NCBI tax ID(s): 1783352 (species)

SI-ID 400381

DSM 102030

Section

Lipingzhangella halophila DSM 102030 is a halophilic, Gram-positive bacterium that was isolated from saline-alkaline desert soil.

Gram-positive
halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Nocardiopsidaceae*
	Genus	*Lipingzhangella*
	Species	**Lipingzhangella halophila**
	Full Scientific Name (LPSN)	Lipingzhangella halophila Zhang et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24898]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #24898]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90.393

Multimedia content

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Caption:

Medium 1159 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24421]	growth	37 °C
[Ref.: #24898]	growth	15.0-40.0 °C
[Ref.: #24898]	optimum	30 °C

[Ref.: #24421]	Temperature range	mesophilic
[Ref.: #24898]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #24898]			optimum	9.0-10.0
[Ref.: #24898]			growth	7.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24898]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.636

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Halophily / tolerance level

halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24898]		NaCl		growth	4.0-18.0	%(w/v)
[Ref.: #24898]		NaCl		optimum	5.0-7.0	%(w/v)

[Ref.: #24898]	Murein short key	A31
[Ref.: #24898]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24898]	adenine ChEBI	-	nitrogen source
[Ref.: #24898]	casein	-	hydrolysis
[Ref.: #24898]	cellobiose ChEBI	+	carbon source
[Ref.: #24898]	cellulose ChEBI	-	hydrolysis
[Ref.: #24898]	D-arabinose ChEBI	-	carbon source
[Ref.: #24898]	D-galactose ChEBI	-	carbon source
[Ref.: #24898]	D-glucose ChEBI	+	carbon source
[Ref.: #24898]	D-mannitol ChEBI	+	carbon source
[Ref.: #24898]	D-mannose ChEBI	-	carbon source
[Ref.: #24898]	D-ribose ChEBI	-	carbon source
[Ref.: #24898]	D-xylose ChEBI	-	carbon source
[Ref.: #24898]	galactitol ChEBI	+	carbon source
[Ref.: #24898]	glycerol ChEBI	+	carbon source
[Ref.: #24898]	glycine ChEBI	-	nitrogen source
[Ref.: #24898]	glycyl L-aspartic acid ChEBI	+	nitrogen source
[Ref.: #24898]	glycyl-l-glutamate ChEBI	+	nitrogen source
[Ref.: #24898]	L-alanine ChEBI	+	nitrogen source
[Ref.: #24898]	L-arabinose ChEBI	-	carbon source
[Ref.: #24898]	L-arginine ChEBI	+	nitrogen source
[Ref.: #24898]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #24898]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #24898]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #24898]	L-histidine ChEBI	+	nitrogen source
[Ref.: #24898]	L-lysine ChEBI	+	nitrogen source
[Ref.: #24898]	L-methionine ChEBI	+	nitrogen source
[Ref.: #24898]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #24898]	L-proline ChEBI	+	nitrogen source
[Ref.: #24898]	L-rhamnose ChEBI	-	carbon source
[Ref.: #24898]	L-serine ChEBI	+	nitrogen source
[Ref.: #24898]	L-threonine ChEBI	+	nitrogen source
[Ref.: #24898]	L-tryptophan ChEBI	-	nitrogen source
[Ref.: #24898]	L-valine ChEBI	+	nitrogen source
[Ref.: #24898]	melibiose ChEBI	+	carbon source
[Ref.: #24898]	myo-inositol ChEBI	+	carbon source
[Ref.: #24898]	nitrate ChEBI	-	reduction
[Ref.: #24898]	raffinose ChEBI	+	carbon source
[Ref.: #24898]	sodium acetate ChEBI	+	carbon source
[Ref.: #24898]	sodium pyruvate ChEBI	+	carbon source
[Ref.: #24898]	sucrose ChEBI	+	carbon source
[Ref.: #24898]	trehalose ChEBI	+	carbon source
[Ref.: #24898]	tween 20 ChEBI	-	hydrolysis
[Ref.: #24898]	tween 40 ChEBI	-	hydrolysis
[Ref.: #24898]	tween 60 ChEBI	-	hydrolysis
[Ref.: #24898]	tween 80 ChEBI	-	hydrolysis
[Ref.: #24898]	xanthine ChEBI	+	nitrogen source
[Ref.: #24898]	xylitol ChEBI	-	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #24898]		hydrogen sulfide ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #24898]		catalase	+	1.11.1.6
[Ref.: #24898]		cytochrome oxidase	-	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24421]	Sample type/isolated from	saline-alkaline desert soil
[Ref.: #24421]	Geographic location (country and/or sea, region)	Xinjiang, Gurbantünggüt desert, Karamay
[Ref.: #24421]	Country	China
[Ref.: #24421]	Country ISO 3 Code	CHN
[Ref.: #24421]	Continent	Asia

[Ref.: #24898]	Enrichment culture	marine agar 2216
[Ref.: #24898]	Enrichment culture composition	modified with addition of 2 % NaCl (w/v) and adjusting pH to 10.0 with autoclaved 10 M NaOH
[Ref.: #24898]	Enrichment culture duration	28 days
[Ref.: #24898]	Enrichment culture temperature	30 ̊C
[Ref.: #24898]	Isolation/enrichment procedure	dilution plating method
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Condition	#Alkaline	-
#Condition	#Saline	-

What are isolation sources categories?

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Global distribution of 16S sequence KU042077 (>99% sequence identity) for Lipingzhangella halophila subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	43
Animal Samples	10
Plant Samples
Total Samples	55

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24421]	Lipingzhangella halophila strain EGI 80537 16S ribosomal RNA gene, partial sequence	KU042077	1528	ENA	1783352 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Lipingzhangella halophila DSM 102030	GCA_014203805	contig	GenBank	1783352 tax ID	*
[Ref.: #66792]	Lipingzhangella halophila strain DSM 102030	1783352.3	wgs	PATRIC	1783352 tax ID	*
[Ref.: #66792]	Lipingzhangella halophila DSM 102030	2863364417	draft	JGI IMG/M	1783352 tax ID	*

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GC-content

67.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lipingzhangella halophila strain DSM 102030 PATRIC: 1783352.3
[Ref.: #69481]	spore-forming	yes	83	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lipingzhangella halophila strain DSM 102030 PATRIC: 1783352.3
[Ref.: #69480]	motile	no	90.788	yes
[Ref.: #69480]	gram-positive	yes	88.978	yes
[Ref.: #69480]	anaerobic	no	98.675	no
[Ref.: #69480]	aerobic	yes	89.695	no
[Ref.: #69480]	halophile	yes	85.446	yes
[Ref.: #69480]	spore-forming	yes	85.879	no
[Ref.: #69480]	thermophile	no	91.856	yes
[Ref.: #69480]	glucose-util	yes	87.28	no
[Ref.: #69480]	flagellated	no	98.304	no
[Ref.: #69480]	glucose-ferment	no	90.392	no

Availability in culture collections External links

[Ref.: #24421]

Culture collection no.

DSM 102030, CGMCC 4.7224, EGI 80537

[Ref.: #90946]

SI-ID 400381

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lipingzhangella halophila gen. nov., sp. nov., a new member of the family Nocardiopsaceae.	Zhang YG, Lu XH, Ding YB, Wang SJ, Zhou XK, Wang HF, Guo JW, Liu YH, Duan YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001312	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24421

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102030

#24898

Y.-G. L. Zhang, Xin-Hua,Ding, Yan-Bo,Wang, Su-Juan,Zhou, Xing-Kui,Wang, Hong-Fei,Guo, Jian-Wei,Liu, Yong-Hong,Duan, Yan-Qing,Li, Wen-Jun: Lipingzhangella halophila gen. nov., sp. nov., a new member of the family Nocardiopsaceae. IJSEM 66: 4071 - 4076 2016 ( DOI 10.1099/ijsem.0.001312 , PubMed 27412719 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90946

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400381.1 )

* These data were automatically processed and therefore are not curated

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Lipingzhangella halophila strain DSM 102030

Lipingzhangella halophila strain DSM 102030

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