Name: Jeotgalicoccus schoeneichii 140805-STR-02
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132617

Type strain:

Species: Jeotgalicoccus schoeneichii

Strain Designation: 140805-STR-02

Culture col. no.: DSM 102815, CCM 8667, LMG 29445, CIP 111030

Strain history: CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 140805-STR-02

NCBI tax ID(s): 1812261 (species)

SI-ID 405213

DSM 102815

Special Collections

Section

Jeotgalicoccus schoeneichii 140805-STR-02 is an aerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from exhaust air of a pig barn.

coccus-shaped
colony-forming
Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Jeotgalicoccus*
	Species	**Jeotgalicoccus schoeneichii**
	Full Scientific Name (LPSN)	Jeotgalicoccus schoeneichii Glaeser et al. 2016

Synonym

"Phocicoccus schoeneichii"

Information on morphological and physiological properties Morphology

[Ref.: #43139]	Gram stain	positive
[Ref.: #122513]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.05

[Ref.: #43139]	Cell width	1.5-2.0 µm

[Ref.: #43139]	Cell shape	coccus-shaped
[Ref.: #122513]	Cell shape	coccus-shaped

[Ref.: #43139]	Motility	no
[Ref.: #122513]	Motility	no

[Ref.: #43139]	Colony color	white
[Ref.: #43139]	Colony shape	circular
[Ref.: #43139]	Incubation period	2 days
[Ref.: #43139]	Cultivation medium used	TSA

[Ref.: #43139]	Colony color	white
[Ref.: #43139]	Colony shape	circular
[Ref.: #43139]	Incubation period	2 days
[Ref.: #43139]	Cultivation medium used	R2A

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42181]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42181]

Culture medium growth

[Ref.: #42181]

Culture medium composition

expand / minimize

[Ref.: #43139]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43139]

Culture medium growth

[Ref.: #43139]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43139]

Culture medium growth

[Ref.: #43139]

Culture medium

Chapman agar

[Ref.: #43139]

Culture medium growth

[Ref.: #24406]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24406]

Culture medium growth

[Ref.: #24406]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24406]

Culture medium composition

expand / minimize

[Ref.: #122513]

Culture medium

CIP Medium 72

[Ref.: #122513]

Culture medium growth

[Ref.: #122513]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #24406]		growth	28 °C
[Ref.: #42181]		growth	30 °C
[Ref.: #43139]		growth	42 °C
[Ref.: #43139]		growth	37 °C
[Ref.: #43139]	no	growth	4 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43139]

Oxygen tolerance

aerobe

[Ref.: #43139]	Type of spore	spore
[Ref.: #43139]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43139]		NaCl		growth	0-8	%(w/v)
[Ref.: #43139]		NaCl		maximum	8	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43139]	2-oxoglutarate ChEBI	-	assimilation
[Ref.: #43139]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43139]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #43139]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #43139]	acetate ChEBI	-	assimilation
[Ref.: #43139]	adipate ChEBI	-	assimilation
[Ref.: #43139]	azelaate ChEBI	-	assimilation
[Ref.: #43139]	beta-alanine ChEBI	-	assimilation
[Ref.: #43139]	cellobiose ChEBI	-	builds acid from
[Ref.: #43139]	cellobiose ChEBI	-	assimilation
[Ref.: #43139]	cis-aconitate ChEBI	-	assimilation
[Ref.: #43139]	citrate ChEBI	-	assimilation
[Ref.: #43139]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43139]	D-fructose ChEBI	-	assimilation
[Ref.: #43139]	D-galactose ChEBI	-	assimilation
[Ref.: #43139]	D-glucose ChEBI	-	builds acid from
[Ref.: #43139]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43139]	D-mannitol ChEBI	-	assimilation
[Ref.: #43139]	D-mannose ChEBI	-	assimilation
[Ref.: #43139]	D-ribose ChEBI	-	assimilation
[Ref.: #43139]	D-sorbitol ChEBI	-	assimilation
[Ref.: #43139]	D-xylose ChEBI	-	builds acid from
[Ref.: #43139]	D-xylose ChEBI	-	assimilation
[Ref.: #43139]	fumarate ChEBI	-	assimilation
[Ref.: #43139]	gamma-aminobutyric acid ChEBI	-	assimilation
[Ref.: #43139]	gluconate ChEBI	-	assimilation
[Ref.: #43139]	glutaric acid ChEBI	-	assimilation
[Ref.: #43139]	glycerol ChEBI	-	assimilation
[Ref.: #43139]	itaconate ChEBI	-	assimilation
[Ref.: #43139]	L-alanine ChEBI	-	assimilation
[Ref.: #43139]	L-arabinose ChEBI	-	assimilation
[Ref.: #43139]	L-aspartate ChEBI	-	assimilation
[Ref.: #43139]	L-histidine ChEBI	-	assimilation
[Ref.: #43139]	L-leucine ChEBI	-	assimilation
[Ref.: #43139]	L-ornithine ChEBI	-	assimilation
[Ref.: #43139]	L-phenylalanine ChEBI	-	assimilation
[Ref.: #43139]	L-proline ChEBI	-	assimilation
[Ref.: #43139]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43139]	L-rhamnose ChEBI	-	assimilation
[Ref.: #43139]	L-serine ChEBI	-	assimilation
[Ref.: #43139]	L-tryptophan ChEBI	-	assimilation
[Ref.: #43139]	lactate ChEBI	-	assimilation
[Ref.: #43139]	maltitol ChEBI	-	assimilation
[Ref.: #43139]	mesaconate ChEBI	-	assimilation
[Ref.: #43139]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43139]	myo-inositol ChEBI	-	assimilation
[Ref.: #43139]	N-acetylgalactosamine ChEBI	-	assimilation
[Ref.: #43139]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43139]	nitrate ChEBI	-	reduction
[Ref.: #43139]	phenylacetate ChEBI	-	assimilation
[Ref.: #43139]	propionate ChEBI	-	assimilation
[Ref.: #43139]	putrescine ChEBI	-	assimilation
[Ref.: #43139]	pyruvate ChEBI	-	assimilation
[Ref.: #43139]	ribitol ChEBI	-	builds acid from
[Ref.: #43139]	ribitol ChEBI	-	assimilation
[Ref.: #43139]	salicin ChEBI	-	assimilation
[Ref.: #43139]	suberic acid ChEBI	-	assimilation
[Ref.: #43139]	sucrose ChEBI	-	builds acid from
[Ref.: #43139]	sucrose ChEBI	-	assimilation
[Ref.: #43139]	trans-aconitate ChEBI	-	assimilation
[Ref.: #43139]	tyrosine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43139]		hydrogen sulfide ChEBI	no
[Ref.: #43139]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43139]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43139]	beta-galactosidase	-	3.2.1.23
[Ref.: #43139]	catalase	+	1.11.1.6
[Ref.: #43139]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43139]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43139]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43139]	urease	-	3.5.1.5

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43139]

Fatty acid	Percentage	ECL
C15:0 anteiso	52.5
C15:0 iso	21.8
C17:0 anteiso	5.6
C14:0	5.3
C16:0	5.1
C16:0 iso	2.5
C17:0 iso	2.3
Unknown 15669	1.7	15669
C17:1 iso ω10c	1.6
C14:0 iso	1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24406]	Sample type/isolated from	exhaust air of a pig barn
[Ref.: #24406]	Geographic location (country and/or sea, region)	North Rhine–Westphalia
[Ref.: #24406]	Country	Germany
[Ref.: #24406]	Country ISO 3 Code	DEU
[Ref.: #24406]	Continent	Europe

[Ref.: #43139]	Sample type/isolated from	exhaust air of a pig barn
[Ref.: #43139]	Geographic location (country and/or sea, region)	North Rhine-Westphalia Germany
[Ref.: #43139]	Country	Germany
[Ref.: #43139]	Country ISO 3 Code	DEU
[Ref.: #43139]	Continent	Europe

[Ref.: #122513]	Sample type/isolated from	Environment, Air exhaust duct of pig fattening farms
[Ref.: #122513]	Geographic location (country and/or sea, region)	North Rhine Westphalia
[Ref.: #122513]	Country	Germany
[Ref.: #122513]	Country ISO 3 Code	DEU
[Ref.: #122513]	Continent	Europe
[Ref.: #122513]	Isolation date	2014-01-02
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Environmental	#Air	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU878872 (>99% sequence identity) for Jeotgalicoccus schoeneichii from Microbeatlas

Aquatic Samples	563
Soil Samples	1309
Animal Samples	7334
Plant Samples	185
Total Samples	9391

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24406]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122513]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24406]	Phocicoccus schoeneichii strain 140805-STR-02 16S ribosomal RNA gene, partial sequence	KU878872	1407	GenBank ENA	1812261 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Jeotgalicoccus schoeneichii CCM 8667	GCA_014635565	contig	GenBank ENA	1812261 tax ID	*
[Ref.: #66792]	Jeotgalicoccus schoeneichii strain CCM 8667	1812261.3	wgs	PATRIC	1812261 tax ID	*

[Ref.: #43139]	GC-content	37.4 mol%	Thermal denaturation, fluorometry
[Ref.: #24406]	GC-content	37.4 mol%	fluorimetric

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Jeotgalicoccus schoeneichii strain CCM 8667 PATRIC: 1812261.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.05	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.841	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	75.904	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	66.866	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.823	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.854	yes

Availability in culture collections External links

[Ref.: #24406]

Culture collection no.

DSM 102815, CCM 8667, LMG 29445, CIP 111030

[Ref.: #90931]

SI-ID 405213

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Jeotgalicoccus schoeneichii sp. nov. isolated from exhaust air of a pig barn.	Glaeser SP, Kleinhagauer T, Jackel U, Klug K, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijsem.0.001230	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24406

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102815

#42181 ; Curators of the CIP;

#43139

Stefanie P. Glaeser, Tanita Kleinhagauer, Udo Jäckel, Kerstin Klug and Peter Kämpfer: Jeotgalicoccus schoeneichii sp. nov. isolated from exhaust air of a pig barn. IJSEM 66: 3503 - 3508 2016 ( DOI 10.1099/ijsem.0.001230 , PubMed 27282768 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90931

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405213.1 )

#122513 Collection of Institut Pasteur ; Curators of the CIP; CIP 111030
* These data were automatically processed and therefore are not curated

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Jeotgalicoccus schoeneichii strain CCM 8667

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