Strain identifier

BacDive ID: 132617

Type strain: Yes

Species: Jeotgalicoccus schoeneichii

Strain Designation: 140805-STR-02

Strain history: CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 140805-STR-02

NCBI tax ID(s): 1812261 (species)

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General

@ref: 24406

BacDive-ID: 132617

DSM-Number: 102815

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped, colony-forming

description: Jeotgalicoccus schoeneichii 140805-STR-02 is an aerobe, mesophilic, Gram-positive bacterium that forms circular colonies and was isolated from exhaust air of a pig barn.

NCBI tax id

  • NCBI tax id: 1812261
  • Matching level: species

strain history

@refhistory
24406<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; 140805-STR-02
122513CIP <- 2016, P. Kämpfer, Giessen Univ., Giessen, Germany: strain 140805-STR-02

doi: 10.13145/bacdive132617.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Jeotgalicoccus
  • species: Jeotgalicoccus schoeneichii
  • full scientific name: Jeotgalicoccus schoeneichii Glaeser et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Phocicoccus schoeneichii

@ref: 24406

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Jeotgalicoccus

species: Jeotgalicoccus schoeneichii

full scientific name: Jeotgalicoccus schoeneichii Glaeser et al. 2016

strain designation: 140805-STR-02

type strain: yes

Morphology

cell morphology

@refgram staincell widthcell shapemotility
43139positive1.5-2.0 µmcoccus-shapedno
122513positivecoccus-shapedno

colony morphology

@refcolony colorcolony shapeincubation periodmedium used
43139whitecircular2 daysTSA
43139whitecircular2 daysR2A

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
42181MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
43139Trypticase Soy Agar (TSA)yes
43139Reasoner's 2A agar (R2A)yes
43139Chapman agaryes
24406TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yesName: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/92
122513CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
42181positivegrowth30mesophilic
43139positivegrowth42thermophilic
43139positivegrowth37mesophilic
43139nogrowth4psychrophilic
24406positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 43139
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43139
  • type of spore: spore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43139NaClpositivegrowth0-8 %(w/v)
43139NaClpositivemaximum8 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4313917108D-arabinose-builds acid from
4313917057cellobiose-builds acid from
4313917634D-glucose-builds acid from
4313962345L-rhamnose-builds acid from
4313965327D-xylose-builds acid from
4313917992sucrose-builds acid from
4313915963ribitol-builds acid from
4313916899D-mannitol-builds acid from
4313917268myo-inositol-builds acid from
4313918186tyrosine-hydrolysis
4313917632nitrate-reduction
4313930089acetate-assimilation
4313917272propionate-assimilation
4313928037N-acetylgalactosamine-assimilation
43139506227N-acetylglucosamine-assimilation
4313930849L-arabinose-assimilation
4313917057cellobiose-assimilation
4313912936D-galactose-assimilation
4313924265gluconate-assimilation
4313916024D-mannose-assimilation
4313915824D-fructose-assimilation
4313917754glycerol-assimilation
4313916899D-mannitol-assimilation
4313968428maltitol-assimilation
4313962345L-rhamnose-assimilation
4313916988D-ribose-assimilation
4313917814salicin-assimilation
4313917992sucrose-assimilation
4313965327D-xylose-assimilation
4313915963ribitol-assimilation
4313917268myo-inositol-assimilation
4313917924D-sorbitol-assimilation
4313917148putrescine-assimilation
4313916383cis-aconitate-assimilation
4313915708trans-aconitate-assimilation
4313916865gamma-aminobutyric acid-assimilation
4313917128adipate-assimilation
4313978208azelaate-assimilation
4313929806fumarate-assimilation
4313917859glutaric acid-assimilation
43139370543-hydroxybutyrate-assimilation
4313917240itaconate-assimilation
4313924996lactate-assimilation
43139309162-oxoglutarate-assimilation
4313915361pyruvate-assimilation
431399300suberic acid-assimilation
4313916947citrate-assimilation
4313936986mesaconate-assimilation
4313916977L-alanine-assimilation
4313916958beta-alanine-assimilation
4313915729L-ornithine-assimilation
4313917295L-phenylalanine-assimilation
4313917115L-serine-assimilation
4313929991L-aspartate-assimilation
4313915971L-histidine-assimilation
4313915603L-leucine-assimilation
4313917203L-proline-assimilation
4313916828L-tryptophan-assimilation
43139161933-hydroxybenzoate-assimilation
43139178794-hydroxybenzoate-assimilation
4313918401phenylacetate-assimilation

metabolite production

@refChebi-IDmetaboliteproduction
4313935581indoleno
4313916136hydrogen sulfideno

enzymes

@refvalueactivityec
43139catalase+1.11.1.6
43139cytochrome oxidase+1.9.3.1
43139arginine dihydrolase-3.5.3.6
43139ornithine decarboxylase-4.1.1.17
43139lysine decarboxylase-4.1.1.18
43139urease-3.5.1.5
43139beta-galactosidase-3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    43139C14:0 iso1.5
    43139C14:05.3
    43139C15:0 iso21.8
    43139C15:0 anteiso52.5
    43139C16:0 iso2.5
    43139Unknown 156691.715669
    43139C16:05.1
    43139C17:1 iso ω10c1.6
    43139C17:0 iso2.3
    43139C17:0 anteiso5.6
  • type of FA analysis: whole cell analysis
  • incubation medium: TSA
  • agar/liquid: agar
  • incubation temperature: 28
  • system: MIS MIDI
  • method/protocol: Kämpfer & Kroppenstedt 1996

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
24406exhaust air of a pig barnNorth Rhine–WestphaliaGermanyDEUEurope
43139exhaust air of a pig barnNorth Rhine-Westphalia GermanyGermanyDEUEurope
122513Environment, Air exhaust duct of pig fattening farmsNorth Rhine WestphaliaGermanyDEUEurope2014-01-02

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Livestock (Husbandry)
#Environmental#Air

taxonmaps

  • @ref: 69479
  • File name: preview.99_32199.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_15623;97_19140;98_23885;99_32199&stattab=map
  • Last taxonomy: Jeotgalicoccus schoeneichii
  • 16S sequence: KU878872
  • Sequence Identity:
  • Total samples: 9391
  • soil counts: 1309
  • aquatic counts: 563
  • animal counts: 7334
  • plant counts: 185

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
244061Risk group (German classification)
1225131Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24406
  • description: Jeotgalicoccus schoeneichii strain 140805-STR-02 16S ribosomal RNA gene, partial sequence
  • accession: KU878872
  • length: 1407
  • database: ena
  • NCBI tax ID: 1812261

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jeotgalicoccus schoeneichii CCM 8667GCA_014635565contigncbi1812261
66792Jeotgalicoccus schoeneichii strain CCM 86671812261.3wgspatric1812261

GC content

@refGC-contentmethod
4313937.4Thermal denaturation, fluorometry
2440637.4fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno90.609yes
gram-positiveyes90.587no
anaerobicno98.032yes
aerobicyes94.35yes
halophileyes93.844no
spore-formingno87.184no
glucose-utilyes78.257no
flagellatedno96.425yes
thermophileno99.796no
glucose-fermentno68.866no

External links

@ref: 24406

culture collection no.: DSM 102815, CCM 8667, LMG 29445, CIP 111030

straininfo link

  • @ref: 90931
  • straininfo: 405213

literature

  • topic: Phylogeny
  • Pubmed-ID: 27282768
  • title: Jeotgalicoccus schoeneichii sp. nov. isolated from exhaust air of a pig barn.
  • authors: Glaeser SP, Kleinhagauer T, Jackel U, Klug K, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001230
  • year: 2016
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Germany, *Housing, Animal, Nucleic Acid Hybridization, *Phylogeny, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Staphylococcaceae/*classification/genetics/isolation & purification, *Sus scrofa, Swine, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24406Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102815Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102815)
42181Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/34642
43139Stefanie P. Glaeser, Tanita Kleinhagauer, Udo Jäckel, Kerstin Klug and Peter KämpferJeotgalicoccus schoeneichii sp. nov. isolated from exhaust air of a pig barn10.1099/ijsem.0.001230IJSEM 66: 3503-3508 201627282768
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90931Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405213.1
122513Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20111030Collection of Institut Pasteur (CIP 111030)