Name: Niallia oryzisoli 1DS3-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132616

Type strain:

Species: Niallia oryzisoli

Strain Designation: 1DS3-10

Culture col. no.: DSM 29761, ACCC 19781

Strain history: <- L. Zhang, Agric. Cult. Coll. of China, Inst. Agric. Res. and Regional Planning, Chinese Academy of Agric. Sci., Beijing, PR China; 1DS3-10

NCBI tax ID(s): 1737571 (species)

SI-ID 399070

DSM 29761

Special Collections

Section

When using BacDive for research please cite our paper

Niallia oryzisoli 1DS3-10 is an aerobe, spore-forming, mesophilic bacterium that forms circular colonies and was isolated from soil, rice rhizosphere.

colony-forming
Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Niallia*
	Species	**Niallia oryzisoli**
	Full Scientific Name (LPSN)	Niallia oryzisoli (Zhang et al. 2016) Gupta et al. 2020

Synonym

Bacillus oryzisoli

Information on morphological and physiological properties Morphology

[Ref.: #43137]	Gram stain	positive

[Ref.: #43137]	Cell shape	rod-shaped

[Ref.: #43137]	Colony color	creamy
[Ref.: #43137]	Colony shape	circular
[Ref.: #43137]	Cultivation medium used	TSA

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43137]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43137]

Culture medium growth

[Ref.: #24405]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24405]

Culture medium growth

[Ref.: #24405]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24405]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24405]	growth	30 °C
[Ref.: #43137]	optimum	30 °C
[Ref.: #43137]	growth	10-45 °C

	pH	Kind of pH		pH
[Ref.: #43137]			optimum	7-8
[Ref.: #43137]			growth	6.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43137]

Oxygen tolerance

aerobe

[Ref.: #43137]	Type of spore	endospore
[Ref.: #43137]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43137]		NaCl		growth	4	%
[Ref.: #43137]		NaCl	no	growth	5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43137]	arbutin ChEBI	-	builds acid from
[Ref.: #43137]	casein	+	hydrolysis
[Ref.: #43137]	cellobiose ChEBI	-	builds acid from
[Ref.: #43137]	citrate ChEBI	-	assimilation
[Ref.: #43137]	D-fructose ChEBI	+	builds acid from
[Ref.: #43137]	D-glucose ChEBI	+	builds acid from
[Ref.: #43137]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43137]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43137]	esculin ChEBI	+	builds acid from
[Ref.: #43137]	gelatin ChEBI	-	hydrolysis
[Ref.: #43137]	L-arabinose ChEBI	+	builds acid from
[Ref.: #43137]	maltose ChEBI	+	builds acid from
[Ref.: #43137]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43137]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43137]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43137]	nitrate ChEBI	+	reduction
[Ref.: #43137]	starch ChEBI	-	hydrolysis
[Ref.: #43137]	sucrose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43137]		hydrogen sulfide ChEBI	no
[Ref.: #43137]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43137]	acid phosphatase	+	3.1.3.2
[Ref.: #43137]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43137]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43137]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43137]	beta-glucosidase	+	3.2.1.21
[Ref.: #43137]	catalase	-	1.11.1.6
[Ref.: #43137]	chymotrypsin	+	3.4.4.5
[Ref.: #43137]	cystine arylamidase	+	3.4.11.3
[Ref.: #43137]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43137]	esterase (C 4)	+
[Ref.: #43137]	esterase Lipase (C 8)	+
[Ref.: #43137]	leucine arylamidase	+	3.4.11.1
[Ref.: #43137]	urease	+	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43137]

Fatty acid	Percentage
C15:0 anteiso	30.9
C15:0 iso	23.2
C14:0 iso	12.4
C16:1ω11c	10.1
C16:0	6
C13:0 iso	3.6
C14:0	2.5
C16:0 iso	2.4
C16:1ω7c alcohol	1.3
C17:0 anteiso	1.1
C17:1 iso ω10c	0.7
C18:1ω9c	0.6
C17:0 iso	0.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24405]	Sample type/isolated from	soil, rice rhizosphere
[Ref.: #24405]	Geographic location (country and/or sea, region)	Hunan Province, Qiyang County, Key Field Monitoring Experimental Station for Red Soil Eco-environment of Ministry of Agriculture
[Ref.: #24405]	Country	China
[Ref.: #24405]	Country ISO 3 Code	CHN
[Ref.: #24405]	Continent	Asia

[Ref.: #43137]	Sample type/isolated from	rice rhizosphere samples
[Ref.: #43137]	Geographic location (country and/or sea, region)	Qiyang, Hunan Province, China
[Ref.: #43137]	Country	China
[Ref.: #43137]	Country ISO 3 Code	CHN
[Ref.: #43137]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT886063 (>99% sequence identity) for Bacillus oryzisoli from Microbeatlas

Aquatic Samples	62
Soil Samples	256
Animal Samples	28
Plant Samples	56
Total Samples	402

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24405]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24405]	Niallia oryzisoli strain 1DS3-10 16S ribosomal RNA gene, partial sequence	KT886063	1507	GenBank ENA	1737571 tax ID

[Ref.: #24405]

GC-content

33.5 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #24405]

Culture collection no.

DSM 29761, ACCC 19781

[Ref.: #90930]

SI-ID 399070

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus oryzisoli sp. nov., isolated from rice rhizosphere.	Zhang XX, Gao JS, Zhang L, Zhang CW, Ma XT, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001215	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24405

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29761

#43137

Xiao-Xia Zhang, Ju-Sheng Gao, Lei Zhang, Cai-Wen Zhang, Xiao-Tong Ma and Jun Zhang: Bacillus oryzisoli sp. nov., isolated from rice rhizosphere. IJSEM 66: 3432 - 3436 2016 ( DOI 10.1099/ijsem.0.001215 , PubMed 27265352 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90930

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399070.1 )

* These data were automatically processed and therefore are not curated

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