Agathobaculum butyriciproducens SR79 | Type strain | DSM 100391, KCTC 15532

Strain identifier

BacDive ID: 132618

Type strain:

Species: Agathobaculum butyriciproducens

Strain Designation: SR79

Culture col. no.: DSM 100391, KCTC 15532

Strain history: <- S. Ahn, KCTC, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, South Korea; SR79 <- S. Ahn {2014}

Section

Name and taxonomic classification
Morphology
Culture and growth conditions
Physiology and metabolism
Isolation, sampling and environmental information
Safety information
Sequence information

External links

Agathobaculum butyriciproducens SR79 is an obligate anaerobe, mesophilic, gram-positive bacterium that was isolated from human faeces of a 23-years-old healthy Korean woman.

gram-positive
rod-shaped
mesophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	23-11-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Firmicutes
	Class	Clostridia
	Order	Eubacteriales
	Family	Oscillospiraceae
	Genus	Agathobaculum
	Species	Agathobaculum butyriciproducens
	Full Scientific Name (PNU)	Agathobaculum butyriciproducens Ahn et al. 2016

Information on morphological and physiological propertiesMorphology

[Ref.: #43140]	Gram stain	positive
[Ref.: #43140]	Cell length	0.9-1.1 µm
[Ref.: #43140]	Cell width	0.6-0.7 µm
[Ref.: #43140]	Cell shape	rod-shaped
[Ref.: #43140]	Motility	no

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #24407]

Culture medium

PY + X MEDIUM (N2/CO2) (DSMZ Medium 104c), anaerobic

[Ref.: #24407]

Culture medium growth

[Ref.: #24407]

Culture medium link

medium recipe provided by DSMZ

		Temperature
[Ref.: #24407]	growth	37 ̊C
[Ref.: #43140]	optimum	37 ̊C
[Ref.: #43140]	growth	30-40 ̊C

[Ref.: #24407]	Temperature range	mesophilic
[Ref.: #43140]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43140]			optimum	7
[Ref.: #43140]			growth	6-8

Information on physiology and metabolismPhysiology and metabolism

[Ref.: #43140]

Oxygen tolerance

obligate anaerobe

[Ref.: #43140]	Type of spore	spore
[Ref.: #43140]	Ability of spore formation	no

[Ref.: #24407]

Name of produced compound

butyrate

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43140]		NaCl		maximum	1	%(w/v)
[Ref.: #43140]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43140]	cellobiose ChEBI	+	builds acid from
[Ref.: #43140]	D-arabinose ChEBI	+	builds acid from
[Ref.: #43140]	D-glucose ChEBI	+	builds acid from
[Ref.: #43140]	D-mannitol ChEBI	+	builds acid from
[Ref.: #43140]	D-mannose ChEBI	+	builds acid from
[Ref.: #43140]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43140]	D-trehalose ChEBI	+	builds acid from
[Ref.: #43140]	D-xylose ChEBI	+	builds acid from
[Ref.: #43140]	esculin ferric citrate	+	hydrolysis
[Ref.: #43140]	gelatin ChEBI	-	hydrolysis
[Ref.: #43140]	glycerol ChEBI	-	builds acid from
[Ref.: #43140]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #43140]	L-tryptophan ChEBI	-	assimilation
[Ref.: #43140]	lactose ChEBI	+	builds acid from
[Ref.: #43140]	maltose ChEBI	+	builds acid from
[Ref.: #43140]	melezitose ChEBI	+	builds acid from
[Ref.: #43140]	raffinose ChEBI	-	builds acid from
[Ref.: #43140]	salicin ChEBI	+	builds acid from
[Ref.: #43140]	sucrose ChEBI	+	builds acid from
[Ref.: #43140]	urea ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43140]	acetate ChEBI	yes
[Ref.: #43140]	butanol ChEBI	yes
[Ref.: #43140]	butyrate ChEBI	yes
[Ref.: #43140]	ethanol ChEBI	yes

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43140]

Fatty acid	Percentage
C16:0	21.6
cis9-C18:1	14.1
cyc9,10-C19:1	14
C14:0	11.8

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #24407]	Sample type/isolated from	human faeces of a 23-years-old healthy Korean woman
[Ref.: #24407]	Country	Republic of Korea
[Ref.: #24407]	Country ISO 3 Code	KOR
[Ref.: #24407]	Continent	Asia

[Ref.: #43140]	Sample type/isolated from	human faeces samples of a 23-years-old healthy Korean woman

Isolation sources categories

#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsSafety information

[Ref.: #24407]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassSequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24407]	Agathobaculum butyriciproducens strain SR79 16S ribosomal RNA gene, partial sequence	KP889099	1383	ENA	1628085 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens DSM 100391	GCA_003096535	scaffold	GenBank	1628085 tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens OF09-22XD	GCA_003434765	scaffold	GenBank	1628085 tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens OF09-27	GCA_003434755	contig	GenBank	1628085 tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens strain DSM 100391	1628085.3	wgs	PATRIC	1628085 tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens strain OF09-22XD	1628085.5	wgs	PATRIC	1628085 tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens strain OF09-27	1628085.4	wgs	PATRIC	1628085 tax ID
[Ref.: #66792]	Agathobaculum butyriciproducens DSM 100391	2756170243	permanent	JGI IMG/M	1628085 tax ID

[Ref.: #24407]

GC-content

52.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collectionsExternal links

[Ref.: #24407]

Culture collection no.

DSM 100391, KCTC 15532

References

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#24407

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100391

#43140

Sharon Ahn, Tae-Eun Jin, Dong-Ho Chang, Moon-Soo Rhee, Hyun Ju Kim, Sang Jun Lee, Doo-Sang Park and Byoung-Chan Kim: Agathobaculum butyriciproducens gen. nov. sp. nov., a strict anaerobic, butyrate-producing gut bacterium isolated from human faeces and reclassification of Eubacterium desmolans as Agathobaculum desmolans comb. nov.. IJSEM 66: 3656 - 3661 2016 ( DOI 10.1099/ijsem.0.001195 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These References are textmined

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