Oceanivirga salmonicida | Type strain | DSM 101867, CIP 110951, NCIMB 703044, AVG 2115 | BacDiveID:132549

Strain identifier

BacDive ID: 132549

Type strain:

Species: Oceanivirga salmonicida

Culture col. no.: DSM 101867, CIP 110951, NCIMB 703044, AVG 2115

Strain history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; AVG 2115 <- NCIMB <- R. Palmer, Univ. College Galway, Aquatic Vet. Group, Ireland

NCBI tax ID(s): 1769291 (species)

Special Collections

Section

Oceanivirga salmonicida DSM 101867 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from moribund, seawater farmed Atlantic salmon with multifocal tissue necrosis.

Gram-negative
rod-shaped
microaerophile
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Fusobacteriota*
	Class	*Fusobacteriia*
	Order	*Fusobacteriales*
	Family	*Leptotrichiaceae*
	Genus	*Oceanivirga*
	Species	**Oceanivirga salmonicida**
	Full Scientific Name (LPSN)	Oceanivirga salmonicida Eisenberg et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43971]	Gram stain	negative

[Ref.: #43971]	Cell length	0.6 µm

[Ref.: #43971]	Cell width	0.4 µm

[Ref.: #43971]	Cell shape	rod-shaped

[Ref.: #43971]	Motility	no

[Ref.: #43971]	Type of hemolysis	beta
[Ref.: #43971]	Hemolysis ability	1
[Ref.: #43971]	Colony size	0.1-0.6 mm
[Ref.: #43971]	Cultivation medium used	Horse blood agar (7%)

[Ref.: #43971]	Type of hemolysis	beta
[Ref.: #43971]	Hemolysis ability	1
[Ref.: #43971]	Colony size	0.1-0.6 mm
[Ref.: #43971]	Cultivation medium used	Columbia agar

[Ref.: #43971]	Type of hemolysis	alpha
[Ref.: #43971]	Hemolysis ability	1
[Ref.: #43971]	Colony size	0.1-0.6 mm
[Ref.: #43971]	Cultivation medium used	Horse blood agar (7%)

[Ref.: #43971]	Type of hemolysis	alpha
[Ref.: #43971]	Hemolysis ability	1
[Ref.: #43971]	Colony size	0.1-0.6 mm
[Ref.: #43971]	Cultivation medium used	Columbia agar

[Ref.: #43971]	Colony size	0.1-0.6 mm
[Ref.: #43971]	Cultivation medium used	Brain heart infusion agar

[Ref.: #43971]	Colony size	0.1-0.6 mm
[Ref.: #43971]	Cultivation medium used	Tryptone soy agar

Information on culture and growth conditions Culture and growth conditions

Culture medium

Brain heart infusion agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Columbia agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Columbia agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Horse blood agar (7%)

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Tryptone soy agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Tryptone soy broth

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

Chocolate blood agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Gassner agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

MacConkey agar

Culture medium growth

Culture medium composition

expand / minimize

Culture medium

Schaedler agar

Culture medium growth

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24338]			growth	20 °C
[Ref.: #43971]			growth	15-22 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43971]	Oxygen tolerance	microaerophile
[Ref.: #43971]	Oxygen tolerance	anaerobe
[Ref.: #43971]	Oxygen tolerance	aerobe

Ability of spore formation

no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43971]		NaCl		growth	1-4	%(w/v)
[Ref.: #43971]		NaCl		optimum	1	%(w/v)
[Ref.: #43971]		NaCl	no	growth	5	%(w/v)

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43971]		citrate ChEBI	-	carbon source
[Ref.: #43971]		fructose ChEBI	+	fermentation
[Ref.: #43971]		gelatin ChEBI	-	hydrolysis
[Ref.: #43971]		glucose ChEBI	+	fermentation
[Ref.: #43971]		glycogen ChEBI	-	fermentation
[Ref.: #43971]		lactose ChEBI	-	fermentation
[Ref.: #43971]		maltose hydrate	+	fermentation
[Ref.: #43971]		mannitol ChEBI	-	fermentation
[Ref.: #43971]		mannose ChEBI	-	fermentation
[Ref.: #43971]		nitrate ChEBI	-	reduction
[Ref.: #43971]		ribose ChEBI	-	fermentation
[Ref.: #43971]		sucrose ChEBI	-	fermentation
[Ref.: #43971]		tween 80 ChEBI	-	hydrolysis
[Ref.: #43971]		xylose ChEBI	-	fermentation
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43971]		ampicillin ChEBI	yes	0.125	µg/mL
[Ref.: #43971]		cephalothin ChEBI	yes	1	µg/mL
[Ref.: #43971]		chloramphenicol ChEBI	yes	16	µg/mL
[Ref.: #43971]		clindamycin ChEBI	yes	0.03125	µg/mL
[Ref.: #43971]		colistin ChEBI	yes	4	µg/mL
[Ref.: #43971]		enrofloxacin ChEBI	yes	2	µg/mL
[Ref.: #43971]		erythromycin ChEBI	yes	1	µg/mL
[Ref.: #43971]		gentamicin ChEBI	yes	8	µg/mL
[Ref.: #43971]		oxacillin ChEBI	yes	2	µg/mL
[Ref.: #43971]		penicillin g ChEBI	yes	0.0625	µg/mL
[Ref.: #43971]		spectinomycin ChEBI	yes	64	µg/mL
[Ref.: #43971]		tetracycline ChEBI	yes	0.0625	µg/mL
		Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #43971]		10	amoxicillin	yes	0.125	µg/mL
[Ref.: #43971]		10	clavulanic acid ChEBI	yes	0.0625	µg/mL
[Ref.: #43971]		26	sulfamethoxazole ChEBI	yes	76	µg/mL
[Ref.: #43971]		26	trimethoprim ChEBI	yes	4	µg/mL

	Metabolite production	Metabolite	Production
[Ref.: #43971]		acetoin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43971]		acetoin ChEBI	-

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43971]		6-phospho-beta-galactosidase	-	3.2.1.85
[Ref.: #43971]		acid phosphatase	+	3.1.3.2
[Ref.: #43971]		alkaline phosphatase	-	3.1.3.1
[Ref.: #43971]		alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43971]		alpha-fucosidase	-	3.2.1.51
[Ref.: #43971]		alpha-galactosidase	-	3.2.1.22
[Ref.: #43971]		alpha-glucosidase	-	3.2.1.20
[Ref.: #43971]		alpha-mannosidase	-	3.2.1.24
[Ref.: #43971]		arginine arylamidase	+
[Ref.: #43971]		arginine dihydrolase	+	3.5.3.6
[Ref.: #43971]		beta-glucosidase	-	3.2.1.21
[Ref.: #43971]		beta-glucuronidase	-	3.2.1.31
[Ref.: #43971]		catalase	-	1.11.1.6
[Ref.: #43971]		cystine arylamidase	-	3.4.11.3
[Ref.: #43971]		cytochrome oxidase	-	1.9.3.1
[Ref.: #43971]		esterase (C 4)	-
[Ref.: #43971]		esterase Lipase (C 8)	-
[Ref.: #43971]		gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #43971]		leucine arylamidase	+	3.4.11.1
[Ref.: #43971]		lipase (C 14)	-
[Ref.: #43971]		lysine decarboxylase	-	4.1.1.18
[Ref.: #43971]		N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43971]		naphthol-AS-BI-phosphohydrolase	-
[Ref.: #43971]		ornithine decarboxylase	-	4.1.1.17
[Ref.: #43971]		phenylalanine deaminase	+	4.3.1.5
[Ref.: #43971]		proline-arylamidase	+	3.4.11.5
[Ref.: #43971]		trypsin	-	3.4.21.4
[Ref.: #43971]		tyrosine arylamidase	+
[Ref.: #43971]		urease	-	3.5.1.5
[Ref.: #43971]		valine arylamidase	-
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24338]	Sample type/isolated from	moribund, seawater farmed Atlantic salmon (Salmo salar) with multifocal tissue necrosis
[Ref.: #24338]	Host species	Salmo salar
[Ref.: #24338]	Country	Ireland
[Ref.: #24338]	Country ISO 3 Code	IRL
[Ref.: #24338]	Continent	Europe

[Ref.: #43971]	Sample type/isolated from	multifocal necrosis in Atlantic salmon (Salmo salar) 1992 in Ireland
[Ref.: #43971]	Country	Ireland
[Ref.: #43971]	Country ISO 3 Code	IRL
[Ref.: #43971]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Inflammation	-
#Environmental	#Microbial community	-
#Host	#Fishes	#Salmonidae

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24338]	Bacterial sp. AVG 2115 16S rRNA gene for 16S ribosomal RNA	X83517	1451	GenBank ENA	1769291 tax ID
[Ref.: #124043]	Oceanivirga salmonicida partial 16S rRNA gene, strain NCIMB703044T, isolate AVG2115T, clone AVG2115T	LT608347	1515	GenBank ENA	1769291 tax ID	*

[Ref.: #43971]	GC-content	25.4 mol%	genome sequence analysis
[Ref.: #24338]	GC-content	25.4 mol%	sequence analysis

Availability in culture collections External links

Culture collection no.

DSM 101867, CIP 110951, NCIMB 703044, AVG 2115

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanivirga miroungae sp. nov., isolated from oral cavity of northern elephant seal (Mirounga angustirostris).	Volokhov DV, Blom J, Amselle M, Delmonte P, Gao Y, Shen Z, Zhang S, Gulland FM, Chizhikov VE, Eisenberg T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004127	2020	*
Phylogeny	Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).	Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R	Int J Syst Evol Microbiol	10.1099/ijsem.0.001050	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24338

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101867

#43971

Tobias Eisenberg, Peter Kämpfer, Christa Ewers, Torsten Semmler, Stefanie P. Glaeser, Evelyn Collins, Margaret Ruttledge, Roy Palmer: Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar). IJSEM 66: 2429 - 2437 2016 ( DOI 10.1099/ijsem.0.001050 , PubMed 27031261 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.