Strain identifier
BacDive ID: 132549
Type strain:
Species: Oceanivirga salmonicida
Strain history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; AVG 2115 <- NCIMB <- R. Palmer, Univ. College Galway, Aquatic Vet. Group, Ireland
NCBI tax ID(s): 1769291 (species)
General
@ref: 24338
BacDive-ID: 132549
DSM-Number: 101867
keywords: 16S sequence, Bacteria, microaerophile, psychrophilic, Gram-negative, rod-shaped
description: Oceanivirga salmonicida DSM 101867 is a microaerophile, psychrophilic, Gram-negative bacterium that was isolated from moribund, seawater farmed Atlantic salmon with multifocal tissue necrosis.
NCBI tax id
- NCBI tax id: 1769291
- Matching level: species
strain history
- @ref: 24338
- history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; AVG 2115 <- NCIMB <- R. Palmer, Univ. College Galway, Aquatic Vet. Group, Ireland
doi: 10.13145/bacdive132549.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/fusobacteriota
- domain: Bacteria
- phylum: Fusobacteriota
- class: Fusobacteriia
- order: Fusobacteriales
- family: Leptotrichiaceae
- genus: Oceanivirga
- species: Oceanivirga salmonicida
- full scientific name: Oceanivirga salmonicida Eisenberg et al. 2016
@ref: 24338
domain: Bacteria
phylum: Fusobacteria
class: Fusobacteriia
order: Fusobacteriales
family: Leptotrichiaceae
genus: Oceanivirga
species: Oceanivirga salmonicida
full scientific name: Oceanivirga salmonicida Eisenberg et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 43971
- gram stain: negative
- cell length: 0.6 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: no
colony morphology
@ref | colony size | medium used | type of hemolysis | hemolysis ability |
---|---|---|---|---|
43971 | 0.1-0.6 mm | Brain heart infusion agar | ||
43971 | 0.1-0.6 mm | Horse blood agar (7%) | beta | 1 |
43971 | 0.1-0.6 mm | Tryptone soy agar | ||
43971 | 0.1-0.6 mm | Columbia agar | beta | 1 |
43971 | 0.1-0.6 mm | Horse blood agar (7%) | alpha | 1 |
43971 | 0.1-0.6 mm | Columbia agar | alpha | 1 |
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
43971 | Brain heart infusion agar | yes | supplemented with 10% foetal calf serum, 1% NaCl | |
43971 | Chocolate blood agar | no | supplemented with vitamin K, haemin | |
43971 | Columbia agar | yes | suppplemeted with 5% sheep bood agar | |
43971 | Columbia agar | yes | suppplemeted with 5% sheep bood agar, nalidixic acid and colistin | |
43971 | Gassner agar | no | supplemented with vitamin K, haemin | |
43971 | Horse blood agar (7%) | yes | supplemented with 1% NaCl | |
43971 | MacConkey agar | no | supplemented with vitamin K, haemin | |
43971 | Schaedler agar | no | supplemented with vitamin K, haemin | |
43971 | Tryptone soy agar | yes | suppemeted with 20% horse serum | |
43971 | Tryptone soy broth | yes | supplemented with 20% cattle or horse serum | |
24338 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535; with strain-specific modifications) Composition: Horse serum 200.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43971 | positive | growth | 15-22 | psychrophilic |
24338 | positive | growth | 20 | psychrophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
43971 | microaerophile |
43971 | anaerobe |
43971 | aerobe |
spore formation
- @ref: 43971
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43971 | NaCl | positive | growth | 1-4 %(w/v) |
43971 | NaCl | positive | optimum | 1 %(w/v) |
43971 | NaCl | no | growth | 5 %(w/v) |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43971 | 16947 | citrate | - | carbon source |
43971 | 28087 | glycogen | - | fermentation |
43971 | 17716 | lactose | - | fermentation |
43971 | 29864 | mannitol | - | fermentation |
43971 | 37684 | mannose | - | fermentation |
43971 | 33942 | ribose | - | fermentation |
43971 | 17992 | sucrose | - | fermentation |
43971 | 18222 | xylose | - | fermentation |
43971 | 5291 | gelatin | - | hydrolysis |
43971 | 53426 | tween 80 | - | hydrolysis |
43971 | 17632 | nitrate | - | reduction |
43971 | 28757 | fructose | + | fermentation |
43971 | 17234 | glucose | + | fermentation |
43971 | maltose hydrate | + | fermentation |
antibiotic resistance
@ref | ChEBI | group ID | metabolite | is antibiotic | is sensitive | sensitivity conc. |
---|---|---|---|---|---|---|
43971 | 48947 | 10 | clavulanic acid | yes | yes | 0.0625 µg/mL |
43971 | 10 | amoxicillin | yes | yes | 0.125 µg/mL | |
43971 | 28971 | ampicillin | yes | yes | 0.125 µg/mL | |
43971 | 3542 | cephalothin | yes | yes | 1 µg/mL | |
43971 | 17698 | chloramphenicol | yes | yes | 16 µg/mL | |
43971 | 3745 | clindamycin | yes | yes | 0.03125 µg/mL | |
43971 | 37943 | colistin | yes | yes | 4 µg/mL | |
43971 | 35720 | enrofloxacin | yes | yes | 2 µg/mL | |
43971 | 48923 | erythromycin | yes | yes | 1 µg/mL | |
43971 | 17833 | gentamicin | yes | yes | 8 µg/mL | |
43971 | 7809 | oxacillin | yes | yes | 2 µg/mL | |
43971 | 18208 | penicillin g | yes | yes | 0.0625 µg/mL | |
43971 | 9215 | spectinomycin | yes | yes | 64 µg/mL | |
43971 | 27902 | tetracycline | yes | yes | 0.0625 µg/mL | |
43971 | 45924 | 26 | trimethoprim | yes | yes | 4 µg/mL |
43971 | 9332 | 26 | sulfamethoxazole | yes | yes | 76 µg/mL |
metabolite production
- @ref: 43971
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 43971
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
43971 | phenylalanine deaminase | + | 4.3.1.5 |
43971 | arginine arylamidase | + | |
43971 | proline-arylamidase | + | 3.4.11.5 |
43971 | leucine arylamidase | + | 3.4.11.1 |
43971 | tyrosine arylamidase | + | |
43971 | acid phosphatase | + | 3.1.3.2 |
43971 | arginine dihydrolase | + | 3.5.3.6 |
43971 | alkaline phosphatase | - | 3.1.3.1 |
43971 | esterase (C 4) | - | |
43971 | esterase Lipase (C 8) | - | |
43971 | lipase (C 14) | - | |
43971 | valine arylamidase | - | |
43971 | cystine arylamidase | - | 3.4.11.3 |
43971 | alpha-chymotrypsin | - | 3.4.21.1 |
43971 | trypsin | - | 3.4.21.4 |
43971 | naphthol-AS-BI-phosphohydrolase | - | |
43971 | alpha-galactosidase | - | 3.2.1.22 |
43971 | 6-phospho-beta-galactosidase | - | 3.2.1.85 |
43971 | alpha-glucosidase | - | 3.2.1.20 |
43971 | beta-glucosidase | - | 3.2.1.21 |
43971 | beta-glucuronidase | - | 3.2.1.31 |
43971 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
43971 | alpha-mannosidase | - | 3.2.1.24 |
43971 | alpha-fucosidase | - | 3.2.1.51 |
43971 | urease | - | 3.5.1.5 |
43971 | ornithine decarboxylase | - | 4.1.1.17 |
43971 | lysine decarboxylase | - | 4.1.1.18 |
43971 | gamma-glutamyltransferase | - | 2.3.2.2 |
43971 | cytochrome oxidase | - | 1.9.3.1 |
43971 | catalase | - | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | country | origin.country | continent |
---|---|---|---|---|---|
24338 | moribund, seawater farmed Atlantic salmon (Salmo salar) with multifocal tissue necrosis | Salmo salar | Ireland | IRL | Europe |
43971 | multifocal necrosis in Atlantic salmon (Salmo salar) 1992 in Ireland | Ireland | IRL | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Inflammation | |
#Environmental | #Microbial community | |
#Host | #Fishes | #Salmonidae |
Sequence information
16S sequences
- @ref: 24338
- description: Bacterial sp. AVG 2115 16S rRNA gene for 16S ribosomal RNA
- accession: X83517
- length: 1451
- database: ena
- NCBI tax ID: 1769291
GC content
@ref | GC-content | method |
---|---|---|
43971 | 25.4 | genome sequence analysis |
24338 | 25.4 | sequence analysis |
External links
@ref: 24338
culture collection no.: DSM 101867, CIP 110951, NCIMB 703044, AVG 2115
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27031261 | Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar). | Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer R | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001050 | 2016 | Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Ireland, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNA | Transcriptome |
Phylogeny | 32223835 | Oceanivirga miroungae sp. nov., isolated from oral cavity of northern elephant seal (Mirounga angustirostris). | Volokhov DV, Blom J, Amselle M, Delmonte P, Gao Y, Shen Z, Zhang S, Gulland FM, Chizhikov VE, Eisenberg T | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004127 | 2020 | Animals, Bacterial Typing Techniques, Base Composition, California, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/isolation & purification, Genes, Bacterial, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S, Seals, Earless/*microbiology, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24338 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101867 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101867) | |||
43971 | Tobias Eisenberg, Peter Kämpfer, Christa Ewers, Torsten Semmler, Stefanie P. Glaeser, Evelyn Collins, Margaret Ruttledge, Roy Palmer | Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar) | 10.1099/ijsem.0.001050 | IJSEM 66: 2429-2437 2016 | 27031261 |