Strain identifier

BacDive ID: 132549

Type strain: Yes

Species: Oceanivirga salmonicida

Strain history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; AVG 2115 <- NCIMB <- R. Palmer, Univ. College Galway, Aquatic Vet. Group, Ireland

NCBI tax ID(s): 1769291 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24338

BacDive-ID: 132549

DSM-Number: 101867

keywords: 16S sequence, Bacteria, microaerophile, psychrophilic, Gram-negative, rod-shaped

description: Oceanivirga salmonicida DSM 101867 is a microaerophile, psychrophilic, Gram-negative bacterium that was isolated from moribund, seawater farmed Atlantic salmon with multifocal tissue necrosis.

NCBI tax id

  • NCBI tax id: 1769291
  • Matching level: species

strain history

  • @ref: 24338
  • history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; AVG 2115 <- NCIMB <- R. Palmer, Univ. College Galway, Aquatic Vet. Group, Ireland

doi: 10.13145/bacdive132549.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Oceanivirga
  • species: Oceanivirga salmonicida
  • full scientific name: Oceanivirga salmonicida Eisenberg et al. 2016

@ref: 24338

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Oceanivirga

species: Oceanivirga salmonicida

full scientific name: Oceanivirga salmonicida Eisenberg et al. 2016

type strain: yes

Morphology

cell morphology

  • @ref: 43971
  • gram stain: negative
  • cell length: 0.6 µm
  • cell width: 0.4 µm
  • cell shape: rod-shaped
  • motility: no

colony morphology

@refcolony sizemedium usedtype of hemolysishemolysis ability
439710.1-0.6 mmBrain heart infusion agar
439710.1-0.6 mmHorse blood agar (7%)beta1
439710.1-0.6 mmTryptone soy agar
439710.1-0.6 mmColumbia agarbeta1
439710.1-0.6 mmHorse blood agar (7%)alpha1
439710.1-0.6 mmColumbia agaralpha1

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
43971Brain heart infusion agaryessupplemented with 10% foetal calf serum, 1% NaCl
43971Chocolate blood agarnosupplemented with vitamin K, haemin
43971Columbia agaryessuppplemeted with 5% sheep bood agar
43971Columbia agaryessuppplemeted with 5% sheep bood agar, nalidixic acid and colistin
43971Gassner agarnosupplemented with vitamin K, haemin
43971Horse blood agar (7%)yessupplemented with 1% NaCl
43971MacConkey agarnosupplemented with vitamin K, haemin
43971Schaedler agarnosupplemented with vitamin K, haemin
43971Tryptone soy agaryessuppemeted with 20% horse serum
43971Tryptone soy brothyessupplemented with 20% cattle or horse serum
24338TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yesName: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535; with strain-specific modifications) Composition: Horse serum 200.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/535

culture temp

@refgrowthtypetemperaturerange
43971positivegrowth15-22psychrophilic
24338positivegrowth20psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
43971microaerophile
43971anaerobe
43971aerobe

spore formation

  • @ref: 43971
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43971NaClpositivegrowth1-4 %(w/v)
43971NaClpositiveoptimum1 %(w/v)
43971NaClnogrowth5 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4397116947citrate-carbon source
4397128087glycogen-fermentation
4397117716lactose-fermentation
4397129864mannitol-fermentation
4397137684mannose-fermentation
4397133942ribose-fermentation
4397117992sucrose-fermentation
4397118222xylose-fermentation
439715291gelatin-hydrolysis
4397153426tween 80-hydrolysis
4397117632nitrate-reduction
4397128757fructose+fermentation
4397117234glucose+fermentation
43971maltose hydrate+fermentation

antibiotic resistance

@refChEBIgroup IDmetaboliteis antibioticis sensitivesensitivity conc.
439714894710clavulanic acidyesyes0.0625 µg/mL
4397110amoxicillinyesyes0.125 µg/mL
4397128971ampicillinyesyes0.125 µg/mL
439713542cephalothinyesyes1 µg/mL
4397117698chloramphenicolyesyes16 µg/mL
439713745clindamycinyesyes0.03125 µg/mL
4397137943colistinyesyes4 µg/mL
4397135720enrofloxacinyesyes2 µg/mL
4397148923erythromycinyesyes1 µg/mL
4397117833gentamicinyesyes8 µg/mL
439717809oxacillinyesyes2 µg/mL
4397118208penicillin gyesyes0.0625 µg/mL
439719215spectinomycinyesyes64 µg/mL
4397127902tetracyclineyesyes0.0625 µg/mL
439714592426trimethoprimyesyes4 µg/mL
43971933226sulfamethoxazoleyesyes76 µg/mL

metabolite production

  • @ref: 43971
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 43971
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
43971phenylalanine deaminase+4.3.1.5
43971arginine arylamidase+
43971proline-arylamidase+3.4.11.5
43971leucine arylamidase+3.4.11.1
43971tyrosine arylamidase+
43971acid phosphatase+3.1.3.2
43971arginine dihydrolase+3.5.3.6
43971alkaline phosphatase-3.1.3.1
43971esterase (C 4)-
43971esterase Lipase (C 8)-
43971lipase (C 14)-
43971valine arylamidase-
43971cystine arylamidase-3.4.11.3
43971alpha-chymotrypsin-3.4.21.1
43971trypsin-3.4.21.4
43971naphthol-AS-BI-phosphohydrolase-
43971alpha-galactosidase-3.2.1.22
439716-phospho-beta-galactosidase-3.2.1.85
43971alpha-glucosidase-3.2.1.20
43971beta-glucosidase-3.2.1.21
43971beta-glucuronidase-3.2.1.31
43971N-acetyl-beta-glucosaminidase-3.2.1.52
43971alpha-mannosidase-3.2.1.24
43971alpha-fucosidase-3.2.1.51
43971urease-3.5.1.5
43971ornithine decarboxylase-4.1.1.17
43971lysine decarboxylase-4.1.1.18
43971gamma-glutamyltransferase-2.3.2.2
43971cytochrome oxidase-1.9.3.1
43971catalase-1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinent
24338moribund, seawater farmed Atlantic salmon (Salmo salar) with multifocal tissue necrosisSalmo salarIrelandIRLEurope
43971multifocal necrosis in Atlantic salmon (Salmo salar) 1992 in IrelandIrelandIRLEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Inflammation
#Environmental#Microbial community
#Host#Fishes#Salmonidae

Sequence information

16S sequences

  • @ref: 24338
  • description: Bacterial sp. AVG 2115 16S rRNA gene for 16S ribosomal RNA
  • accession: X83517
  • length: 1451
  • database: ena
  • NCBI tax ID: 1769291

GC content

@refGC-contentmethod
4397125.4genome sequence analysis
2433825.4sequence analysis

External links

@ref: 24338

culture collection no.: DSM 101867, CIP 110951, NCIMB 703044, AVG 2115

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27031261Oceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar).Eisenberg T, Kampfer P, Ewers C, Semmler T, Glaeser SP, Collins E, Ruttledge M, Palmer RInt J Syst Evol Microbiol10.1099/ijsem.0.0010502016Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/genetics/isolation & purification, Genes, Bacterial, Ireland, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNATranscriptome
Phylogeny32223835Oceanivirga miroungae sp. nov., isolated from oral cavity of northern elephant seal (Mirounga angustirostris).Volokhov DV, Blom J, Amselle M, Delmonte P, Gao Y, Shen Z, Zhang S, Gulland FM, Chizhikov VE, Eisenberg TInt J Syst Evol Microbiol10.1099/ijsem.0.0041272020Animals, Bacterial Typing Techniques, Base Composition, California, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fusobacteria/*classification/isolation & purification, Genes, Bacterial, Mouth/*microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S, Seals, Earless/*microbiology, Sequence Analysis, DNATranscriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24338Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101867Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101867)
43971Tobias Eisenberg, Peter Kämpfer, Christa Ewers, Torsten Semmler, Stefanie P. Glaeser, Evelyn Collins, Margaret Ruttledge, Roy PalmerOceanivirga salmonicida gen. nov., sp. nov., a member of the Leptotrichiaceae isolated from Atlantic salmon (Salmo salar)10.1099/ijsem.0.001050IJSEM 66: 2429-2437 201627031261