Actinomadura gamaensis (DSM 100815, CGMCC 4.7301, NEAU-Gz5)

Name: Actinomadura gamaensis (DSM 100815, CGMCC 4.7301, NEAU-Gz5)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132523

Type strain

Strain Designation NEAU-Gz5

Culture col. no. DSM 100815 CGMCC 4.7301 NEAU-Gz5 JCM 32486

NCBI tax ID(s) 1763541

Special Collections DSMZ JCM

History DSMZ <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-Gz5 JCM <-- CGMCC 4.7301 <-- C. Liu; Northeast Agric. Univ., China; NEAU-Gz5.

Links

Actinomadura gamaensis NEAU-Gz5 is a bacterium that was isolated from tropical soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 404709

JCM 32486,DSM 100815

@ref 20215

Last LPSN update 2026-05-29 08:37:53

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Thermomonosporaceae

Genus Actinomadura

Species Actinomadura gamaensis

Full scientific name Actinomadura gamaensis Abagana et al. 2016

Morphology

Cell morphology

@ref	Motility	Confidence	Gram stain
125439		94.098
125439		99.85	positive

Multimedia

@ref:	24312
multimedia content:	DSM_100815.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100815.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24312	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24312	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.499

Spore formation

@ref	Spore formation	Confidence
125439		97.542

Observation

67770

Observationquinones: MK-9(H₈), MK-9(H₆)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil
#Climate	#Hot	#Tropical

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24312	tropical soil	Hadjer lamis, Gama (13° 0' N, 15° 44' E)	Chad	TCD	Africa	13	15.7333 13/15.7333
67770	Tropical soil from Gama		Chad	TCD	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24312	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM4265212v1 assembly for Actinomadura gamaensis CGMCC 4.7301	scaffold	GCA_042652125	1763541	60.95

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24312	Actinomadura gamaensis strain NEAU-Gz5 16S ribosomal RNA gene, partial sequence	KT989505	1523		1763541

GC content

@ref	GC-content (mol%)	Method
24312	67.1	thermal denaturation, midpoint method (Tm)
67770	65.4-68.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM4265212v1 assembly for Actinomadura gamaensis CGMCC 4.7301
NCBI: GCA_042652125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.50	no
125439	gram_stain	BacteriaNetⓘ	positive	99.85	no
125439	spore_formation	BacteriaNetⓘ	yes	97.54	no
125439	motility	BacteriaNetⓘ	no	94.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura harenae sp. nov., a novel actinomycete isolated from sea sand in Sanya.	Hu J, Han C, Yu B, Zhao J, Guo X, Shen Y, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.003819	2020
Phylogeny	Actinomadura logoneensis sp. nov., a novel actinomycete isolated from the soil.	Shi L, Han L, Guo X, Zhao J, Wang J, Wang H, Jiang S, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.003579	2019
Phylogeny	Actinomadura rhizosphaerae sp. nov., isolated from rhizosphere soil of the plant Azadirachta indica.	Malisorn K, Kanchanasin P, Phongsopitanun W, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002940	2018
Phylogeny	Actinomadura gamaensis sp. nov., a novel actinomycete isolated from soil in Gama, Chad.	Abagana AY, Sun P, Liu C, Cao T, Zheng W, Zhao S, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-016-0683-8	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24312	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100815
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Actinomadura gamaensis (DSM 100815, CGMCC 4.7301, NEAU-Gz5)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_042652125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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