Risungbinella massiliensis (DSM 46691, CSUR P1082, GD1)

Name: Risungbinella massiliensis (DSM 46691, CSUR P1082, GD1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132524

Type strain

Strain Designation GD1

Culture col. no. DSM 46691 CSUR P1082 GD1

NCBI tax ID(s) 1329796

Special Collections DSMZ Cadoret human gut

Links

Risungbinella massiliensis GD1 is a mesophilic prokaryote that was isolated from feces of 38-year-old male who suffered from Coxiella burnetii vascular infection.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402178

DSM 46691

@ref 20215

Last LPSN update 2025-12-16 10:01:32

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Thermoactinomycetaceae

Genus Risungbinella

Species Risungbinella massiliensis

Full scientific name Risungbinella massiliensis Dubourg et al. 2016

Morphology

Multimedia

@ref:	24313
multimedia content:	DSM_46691.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_46691.jpg
caption:	Medium 535a 37°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24313	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
24313	TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR+BLOOD (DSMZ Medium 535a) Composition: None 50.0 g/l Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24313	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	96.7

Spore formation

@ref	Spore formation	Confidence
125438		91.116

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient
#Host	#Microbial
#Host Body-Site	#Organ
#Host Body Product	#Gastrointestinal tract
#Host	#Human

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
24313	feces of 38-year-old male who suffered from Coxiella burnetii vascular infection	Coxiella burnetii	France	FRA	Europe

Taxonmaps

69479

Global distribution of 16S sequence HF952921 (>99% sequence identity) for Risungbinella massiliensis from Microbeatlas

Aquatic Samples	236
Soil Samples	857
Animal Samples	2168
Plant Samples	247
Total Samples	3508

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24313	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Pytheasella massiliensis assembly for Risungbinella massiliensis GD1	scaffold	GCA_000942395	1329796.4	2630968691	1329796	66.76

Genome browser: GCA_000942395

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24313	Thermoactinomycetaceae bacterium GD1 partial 16S rRNA gene, isolate GD1	HF952921	1464		1329796

GC content

@ref	GC-content (mol%)	Method
24313	40.1	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Risungbinella massiliensis GD1
NCBI: GCA_000942395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	88.60	no
125439	motility	BacteriaNetⓘ	yes	76.10	no
125439	gram_stain	BacteriaNetⓘ	variable	79.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Risungbinella massiliensis GD1
NCBI: GCA_000942395.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	78.89	no
125438	anaerobic	anaerobicⓘ	no	85.63	no
125438	aerobic	aerobicⓘ	yes	72.06	no
125438	spore-forming	spore-formingⓘ	yes	91.12	no
125438	thermophilic	thermophileⓘ	no	78.77	yes
125438	flagellated	motile2+ⓘ	no	66.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Risungbinella massiliensis sp. nov., a new member of Thermoactinomycetaceae isolated from human gut.	Dubourg G, Lagier JC, Robert C, Armstrong N, Couderc C, Fournier PE, Raoult D	Antonie Van Leeuwenhoek	10.1007/s10482-016-0677-6	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24313	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46691
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Risungbinella massiliensis (DSM 46691, CSUR P1082, GD1)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000942395

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media