Name: Spiribacter vilamensis SV525
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132270

Type strain:

Species: Spiribacter vilamensis

Strain Designation: SV525

Culture col. no.: DSM 21056, JCM 16388, NCIMB 14596

Strain history: R. J. Menes; Univ. de la República, Uruguay; SV525.

NCBI tax ID(s): 531306 (species)

SI-ID 405587

DSM 21056

Special Collections

DSMZ
JCM

Section

Spiribacter vilamensis SV525 is a Gram-negative bacterium that was isolated from sediment from a hypersaline lagoon.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Chromatiales*
	Family	*Ectothiorhodospiraceae*
	Genus	*Spiribacter*
	Species	**Spiribacter vilamensis**
	Full Scientific Name (LPSN)	Spiribacter vilamensis (Menes et al. 2016) León et al. 2020

Synonym

Halopeptonella vilamensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24059]

Culture medium

MEDIUM 514 PLUS ADDITIONAL SALT (DSMZ Medium 514b)

[Ref.: #24059]

Culture medium growth

[Ref.: #24059]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24059]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24059]			growth	28 °C
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %92.852
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24059]	Sample type/isolated from	sediment from a hypersaline lagoon
[Ref.: #24059]	Geographic location (country and/or sea, region)	Jujuy, Laguna Vilama (22° 35' S 66° 55' W at 4600 m above sea level)
[Ref.: #24059]	Country	Argentina
[Ref.: #24059]	Country ISO 3 Code	ARG
[Ref.: #24059]	Continent	Middle and South America
[Ref.: #24059]	Geographic location	-22.5833°/-66.9167°

[Ref.: #67770]	Sample type/isolated from	Sediment from a hypersaline lake located at 4,600 m above sea level
[Ref.: #67770]	Geographic location (country and/or sea, region)	Laguna Vilama
[Ref.: #67770]	Country	Argentina
[Ref.: #67770]	Country ISO 3 Code	ARG
[Ref.: #67770]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU557314 (>99% sequence identity) for Spiribacter from Microbeatlas

Aquatic Samples	14
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	17

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24059]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24059]	Spiribacter vilamensis strain SV525 16S ribosomal RNA gene, partial sequence	EU557314	1437	GenBank ENA	531306 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Spiribacter vilamensis DSM 21056	GCA_004217415	contig	GenBank ENA	531306 tax ID
[Ref.: #66792]	Spiribacter vilamensis DSM 21056	GCA_007625165	scaffold	GenBank ENA	531306 tax ID	*
[Ref.: #66792]	Halopeptonella vilamensis strain DSM 21056	531306.4	wgs	PATRIC	531306 tax ID	*
[Ref.: #66792]	Halopeptonella vilamensis strain DSM 21056	531306.3	wgs	PATRIC	531306 tax ID	*
[Ref.: #66792]	Halopeptonella vilamensis DSM 21056	2802429687	draft	JGI IMG/M	531306 tax ID	*

[Ref.: #24059]

GC-content

60.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Halopeptonella vilamensis DSM 21056 NCBI: GCA_007625165.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halopeptonella vilamensis DSM 21056 NCBI: GCA_007625165.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.379	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	60.558	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	92.852	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.677	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	73.634	no

Availability in culture collections External links

[Ref.: #24059]

Culture collection no.

DSM 21056, JCM 16388, NCIMB 14596

[Ref.: #90617]

SI-ID 405587

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spiribacter aquaticus Leon et al. 2017 is a later heterotypic synonym of Spiribacter roseus Leon et al. 2016. Reclassification of Halopeptonella vilamensis Menes et al. 2016 as Spiribacter vilamensis comb. nov.	Leon MJ, Galisteo C, Ventosa A, Sanchez-Porro C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004113	2020	*
Phylogeny	Halopeptonella vilamensis gen. nov, sp. nov., a halophilic strictly aerobic bacterium of the family Ectothiorhodospiraceae.	Menes RJ, Viera CE, Farias ME, Seufferheld MJ	Extremophiles	10.1007/s00792-015-0793-7	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24059

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21056

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90617

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405587.1 )

* These data were automatically processed and therefore are not curated

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Halopeptonella vilamensis DSM 21056

Halopeptonella vilamensis DSM 21056

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