Name: Leucobacter celer subsp. astrifaciens CBX151
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132271

Type strain:

Species: Leucobacter celer subsp. astrifaciens

Strain Designation: CBX151, Verde1

Culture col. no.: DSM 27159, CIP 110720, JCM 31935

Strain history: CIP <- 2014, L. Clark, Oxford Univ., Oxford, UK: strain CBX151

NCBI tax ID(s): 1461260 (subspecies)

SI-ID 406324

DSM 27159, CIP 110720

Special Collections

Section

When using BacDive for research please cite our paper

Leucobacter celer subsp. astrifaciens CBX151 is a mesophilic, Gram-negative, rod-shaped animal pathogen that was isolated from diseased nematode strain of genus Caenorhabditis.

Gram-negative
rod-shaped
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Leucobacter*
	Species	**Leucobacter celer subsp. astrifaciens**
	Full Scientific Name (LPSN)	Leucobacter celer subsp. astrifaciens Clark and Hodgkin 2015

Information on morphological and physiological properties Morphology

[Ref.: #117231]	Gram stain	negative

[Ref.: #117231]	Cell shape	rod-shaped

[Ref.: #117231]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %93

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24060]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24060]

Culture medium growth

[Ref.: #24060]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24060]

Culture medium composition

expand / minimize

[Ref.: #117231]

Culture medium

CIP Medium 72

[Ref.: #117231]

Culture medium growth

[Ref.: #117231]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #24060]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %94.6

[Ref.: #67770]

Observation

quinones: MK-10, MK-11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24060]	Sample type/isolated from	diseased nematode strain of genus Caenorhabditis
[Ref.: #24060]	Host species	Caenorhabditis
[Ref.: #24060]	Geographic location (country and/or sea, region)	Santa Antao, Pico da Cruz (17° 6' 0'' N 25° 01' 45'' E)
[Ref.: #24060]	Country	Cape Verde
[Ref.: #24060]	Country ISO 3 Code	CPV
[Ref.: #24060]	Continent	Africa
[Ref.: #24060]	Geographic location	17.1000°/-25.0292°

[Ref.: #67770]	Sample type/isolated from	Nematodes from Santa Antao
[Ref.: #67770]	Country	Cape Verde
[Ref.: #67770]	Country ISO 3 Code	CPV
[Ref.: #67770]	Continent	Africa

[Ref.: #117231]	Sample type/isolated from	Environment, Soil
[Ref.: #117231]	Country	Cape Verde
[Ref.: #117231]	Country ISO 3 Code	CPV
[Ref.: #117231]	Continent	Africa
[Ref.: #117231]	Isolation date	2009
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Nematoda

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF906844 (>99% sequence identity) for Leucobacter celer from Microbeatlas

Aquatic Samples	99
Soil Samples	29
Animal Samples	828
Plant Samples	23
Total Samples	979

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24060]	Pathogenicity (animal)	yes
[Ref.: #24060]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #117231]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24060]	Leucobacter celer subsp. astrifaciens strain CBX151 16S ribosomal RNA gene, partial sequence	KF906844	1161	GenBank ENA	1461260 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leucobacter celer subsp. astrifaciens CBX151	GCA_001273835	contig	GenBank ENA	1461260 tax ID
[Ref.: #66792]	Leucobacter sp. CBX151	1461260.3	wgs	PATRIC	1461260 tax ID	*

[Ref.: #24060]

GC-content

69.09 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leucobacter sp. CBX151 PATRIC: 1461260.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	87.472	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.702	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	76.287	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	87.227	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Leucobacter celer subsp. astrifaciens CBX151 NCBI: GCA_001273835
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	80
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	52.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	84.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	94.6

Availability in culture collections External links

[Ref.: #24060]

Culture collection no.

DSM 27159, CIP 110720, JCM 31935

[Ref.: #90618]

SI-ID 406324

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leucobacter triazinivorans sp. nov., a s-triazine herbicide prometryn-degrading bacterium isolated from sludge.	Sun LN, Pan DD, Wu XW, Yang ED, Hua RM, Li QX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002483	2017	*
Phylogeny	Leucobacter musarum subsp. musarum sp. nov., subsp. nov., Leucobacter musarum subsp. japonicus subsp. nov., and Leucobacter celer subsp. astrifaciens subsp. nov., three nematopathogenic bacteria isolated from Caenorhabditis, with an emended description of Leucobacter celer.	Clark LC, Hodgkin J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000523	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24060

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27159

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90618

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406324.1 )

#117231 Collection of Institut Pasteur ; Curators of the CIP; CIP 110720

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Leucobacter sp. CBX151

Leucobacter celer subsp. astrifaciens CBX151

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