Name: Acinetobacter variabilis strain Tjernberg & Ursing 151a
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132198

Type strain:

Species: Acinetobacter variabilis

Strain Designation: strain Tjernberg & Ursing 151a

Culture col. no.: DSM 102977, CCM 8555, CCUG 26390, CIP 110486, NIPH 2171

Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2171, Genomic sp. 15TU <- CCUG <- Tjernberg 151a

NCBI tax ID(s): 70346 (species)

SI-ID 51044

CCUG 26390, CIP 110486

Special Collections

Other strains from Acinetobacter variabilis

Section

When using BacDive for research please cite our paper

Acinetobacter variabilis strain Tjernberg & Ursing 151a is a mesophilic, Gram-negative, oval-shaped bacterium that was isolated from human urine.

Gram-negative
oval-shaped
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Moraxellaceae*
	Genus	*Acinetobacter*
	Species	**Acinetobacter variabilis**
	Full Scientific Name (LPSN)	Acinetobacter variabilis Krizova et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #123796]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %98
[Ref.: #125439]	Gram stain	negative Confidence in %92.3

[Ref.: #123796]	Cell shape	oval-shaped

[Ref.: #123796]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #38466]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38466]

Culture medium growth

[Ref.: #38466]

Culture medium composition

expand / minimize

[Ref.: #23987]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #23987]

Culture medium growth

[Ref.: #23987]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23987]

Culture medium composition

expand / minimize

[Ref.: #123796]

Culture medium

CIP Medium 72

[Ref.: #123796]

Culture medium growth

[Ref.: #123796]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #23987]			growth	30 °C
[Ref.: #38466]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125438]	Oxygen tolerance	aerobe Confidence in %90.969
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.3

[Ref.: #125438]	Ability of spore formation	no Confidence in %91.485
[Ref.: #125439]	Ability of spore formation	no Confidence in %91

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E, API 20NE
[Ref.: #68374]	cellobiose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	D-glucose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	D-mannitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	L-arabinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	lysine ChEBI	-	degradation	* from API ID32E
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68374]	malonate ChEBI	-	assimilation	* from API ID32E
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68374]	maltose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	myo-inositol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E
[Ref.: #68374]	palatinose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	sucrose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	trehalose ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	-	energy source	* from API ID32E, API 20NE
[Ref.: #68374]	urea ChEBI	-	hydrolysis	* from API ID32E, API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68374]		indole ChEBI	no	* from API ID32E, API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68374]		indole ChEBI	-	* from API ID32E, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68374]	alpha-galactosidase	-	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	-		* from API ID32E
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E, API 20NE
[Ref.: #68374]	beta-galactosidase	-	3.2.1.23	* from API ID32E
[Ref.: #68374]	beta-glucosidase	-	3.2.1.21	* from API ID32E, API 20NE
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68374]	L-aspartate arylamidase	+	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	+		* from API ID32E
[Ref.: #68374]	lysine decarboxylase	-	4.1.1.18	* from API ID32E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E, API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23987]	27127	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	+	-

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #48431]	955	-	-	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23987]	Sample type/isolated from	human urine
[Ref.: #23987]	Geographic location (country and/or sea, region)	Malmö
[Ref.: #23987]	Country	Sweden
[Ref.: #23987]	Country ISO 3 Code	SWE
[Ref.: #23987]	Continent	Europe

[Ref.: #48431]	Sample type/isolated from	Human urine
[Ref.: #48431]	Sampling date	1987
[Ref.: #48431]	Geographic location (country and/or sea, region)	Malmö
[Ref.: #48431]	Country	Sweden
[Ref.: #48431]	Country ISO 3 Code	SWE
[Ref.: #48431]	Continent	Europe

[Ref.: #123796]	Sample type/isolated from	Human, Urine
[Ref.: #123796]	Geographic location (country and/or sea, region)	Malmö
[Ref.: #123796]	Country	Sweden
[Ref.: #123796]	Country ISO 3 Code	SWE
[Ref.: #123796]	Continent	Europe
[Ref.: #123796]	Isolation date	1980
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Urine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP278590 (>99% sequence identity) for Acinetobacter from Microbeatlas

Aquatic Samples	13775
Soil Samples	6187
Animal Samples	39559
Plant Samples	2386
Total Samples	61907

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #123796]	Biosafety level	1	Risk group (French classification)
[Ref.: #23987]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23987]	Acinetobacter variabilis strain NIPH 2171 16S ribosomal RNA gene, complete sequence	KP278590	1527	GenBank ENA	70346 tax ID
[Ref.: #124043]	Acinetobacter sp. NIPH 2171 16S ribosomal RNA gene, partial sequence.	KC763178	1500	GenBank ENA	70346 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acinetobacter variabilis NIPH 2171	GCA_000369625	scaffold	GenBank ENA	70346 tax ID	*
[Ref.: #66792]	Acinetobacter sp. NIPH 2171	1217693.3	wgs	PATRIC	70346 tax ID	*
[Ref.: #66792]	Acinetobacter variabilis strain FDAARGOS_1487	70346.10	complete	PATRIC	70346 tax ID	*
[Ref.: #66792]	Acinetobacter variabilis NIPH 2171	2565956655	draft	JGI IMG/M	70346 tax ID	*
[Ref.: #66792]	Acinetobacter variabilis strain FDAARGOS_1487	70346.13	complete	PATRIC	70346 tax ID	*
[Ref.: #66792]	Acinetobacter variabilis strain FDAARGOS_1487	70346.11	complete	PATRIC	70346 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter variabilis strain FDAARGOS_1487 strain Not applicable PATRIC: 70346.10
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.907	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.485	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	90.969	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.475	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	78.722	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acinetobacter variabilis strain FDAARGOS_1487 PATRIC: 70346.10
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	92.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	50.1
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	91

Availability in culture collections External links

[Ref.: #23987]

Culture collection no.

DSM 102977, CCM 8555, CCUG 26390, CIP 110486, NIPH 2171

[Ref.: #90552]

SI-ID 51044

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Acinetobacter variabilis sp. nov. (formerly DNA group 15 sensu Tjernberg & Ursing), isolated from humans and animals.	Krizova L, McGinnis J, Maixnerova M, Nemec M, Poirel L, Mingle L, Sedo O, Wolfgang W, Nemec A	Int J Syst Evol Microbiol	10.1099/ijs.0.000028	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23987

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102977

#38466 ; Curators of the CIP;
#48431 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 26390

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68374

Automatically annotated from API ID32E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90552

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID51044.1 )

#123796 Collection of Institut Pasteur ; Curators of the CIP; CIP 110486

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Search for species Acinetobacter variabilis in external resources:
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Acinetobacter variabilis strain FDAARGOS_1487 strain Not applicable

Acinetobacter variabilis strain FDAARGOS_1487

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Change proposal