Strain identifier
BacDive ID: 132198
Type strain:
Species: Acinetobacter variabilis
Strain Designation: strain Tjernberg & Ursing 151a
Strain history: CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2171, Genomic sp. 15TU <- CCUG <- Tjernberg 151a
NCBI tax ID(s): 70346 (species)
General
@ref: 23987
BacDive-ID: 132198
DSM-Number: 102977
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, oval-shaped
description: Acinetobacter variabilis strain Tjernberg & Ursing 151a is a mesophilic, Gram-negative, oval-shaped bacterium that was isolated from human urine.
NCBI tax id
- NCBI tax id: 70346
- Matching level: species
strain history
@ref | history |
---|---|
23987 | <- CCM <- A. Nemec; NIPH 2171 <- I. Tjernberg; strain Tjernberg & Ursing 151a |
123796 | CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 2171, Genomic sp. 15TU <- CCUG <- Tjernberg 151a |
doi: 10.13145/bacdive132198.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Acinetobacter
- species: Acinetobacter variabilis
- full scientific name: Acinetobacter variabilis Krizova et al. 2015
@ref: 23987
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Moraxellaceae
genus: Acinetobacter
species: Acinetobacter variabilis
full scientific name: Acinetobacter variabilis Krizova et al. 2015
strain designation: strain Tjernberg & Ursing 151a
type strain: yes
Morphology
cell morphology
- @ref: 123796
- gram stain: negative
- cell shape: oval-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
38466 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
23987 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | https://mediadive.dsmz.de/medium/535 |
123796 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
38466 | positive | growth | 30 | mesophilic |
23987 | positive | growth | 30 | mesophilic |
Physiology and metabolism
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | - | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | - | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | no |
68369 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test |
---|---|---|---|
68374 | 35581 | indole | - |
68369 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | + | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | - | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | + | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
68369 | cytochrome oxidase | - | 1.9.3.1 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
23987 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | + | - | + | - |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
48431 | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date | isolation date |
---|---|---|---|---|---|---|---|
23987 | human urine | Malmö | Sweden | SWE | Europe | ||
48431 | Human urine | Malmö | Sweden | SWE | Europe | 1987 | |
123796 | Human, Urine | Malmö | Sweden | SWE | Europe | 1980 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Fluids | #Urine |
taxonmaps
- @ref: 69479
- File name: preview.99_1891.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_8;96_11;97_459;98_1490;99_1891&stattab=map
- Last taxonomy: Acinetobacter
- 16S sequence: KP278590
- Sequence Identity:
- Total samples: 61907
- soil counts: 6187
- aquatic counts: 13775
- animal counts: 39559
- plant counts: 2386
Safety information
risk assessment
- @ref: 123796
- biosafety level: 1
- biosafety level comment: Risk group (French classification)
Sequence information
16S sequences
- @ref: 23987
- description: Acinetobacter variabilis strain NIPH 2171 16S ribosomal RNA gene, complete sequence
- accession: KP278590
- length: 1527
- database: ena
- NCBI tax ID: 70346
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acinetobacter variabilis NIPH 2171 | GCA_000369625 | scaffold | ncbi | 70346 |
66792 | Acinetobacter sp. NIPH 2171 | 1217693.3 | wgs | patric | 70346 |
66792 | Acinetobacter variabilis strain FDAARGOS_1487 | 70346.10 | complete | patric | 70346 |
66792 | Acinetobacter variabilis NIPH 2171 | 2565956655 | draft | img | 70346 |
66792 | Acinetobacter variabilis strain FDAARGOS_1487 | 70346.13 | complete | patric | 70346 |
66792 | Acinetobacter variabilis strain FDAARGOS_1487 | 70346.11 | complete | patric | 70346 |
66792 | Acinetobacter variabilis strain FDAARGOS_1487 | 70346.12 | complete | patric | 70346 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 97.785 | no |
anaerobic | no | 98.105 | no |
halophile | no | 82.965 | no |
spore-forming | no | 97.055 | no |
glucose-util | no | 85.369 | yes |
thermophile | no | 99.823 | no |
flagellated | no | 94.814 | no |
motile | no | 90.497 | no |
aerobic | yes | 93.124 | no |
glucose-ferment | no | 91.273 | yes |
External links
@ref: 23987
culture collection no.: DSM 102977, CCM 8555, CCUG 26390, CIP 110486, NIPH 2171
straininfo link
- @ref: 90552
- straininfo: 51044
literature
- topic: Phylogeny
- Pubmed-ID: 25510976
- title: Acinetobacter variabilis sp. nov. (formerly DNA group 15 sensu Tjernberg & Ursing), isolated from humans and animals.
- authors: Krizova L, McGinnis J, Maixnerova M, Nemec M, Poirel L, Mingle L, Sedo O, Wolfgang W, Nemec A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000028
- year: 2014
- mesh: Acinetobacter/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
- topic2: Pathogenicity
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
23987 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102977 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102977) | |
38466 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/8351 | ||
48431 | Curators of the CCUG | https://www.ccug.se/strain?id=26390 | Culture Collection University of Gothenburg (CCUG) (CCUG 26390) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68369 | Automatically annotated from API 20NE | |||
68374 | Automatically annotated from API ID32E | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90552 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID51044.1 | |
123796 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110486 | Collection of Institut Pasteur (CIP 110486) |