Acinetobacter variabilis (CIP 110487, NIPH 899)

Name: Acinetobacter variabilis (CIP 110487, NIPH 899)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 136891

Type strain

Culture col. no. CIP 110487 NIPH 899

NCBI tax ID(s) 70346

Special Collections CIP

History 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 899, Genomic sp. 15TU CIP <- 2012, A. Nemec, Inst. Pasteur, Paris, France: strain NIPH 899, Genomic sp. 15TU

Links

Acinetobacter variabilis CIP 110487 is a Gram-negative, oval-shaped bacterium of the family Moraxellaceae.

Gram-negative oval-shaped genome sequence Bacteria

Name and taxonomic classification

SI-ID 412632

CIP 110487

@ref 20215

Last LPSN update 2026-02-09 11:32:46

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Moraxellaceae

Genus Acinetobacter

Species Acinetobacter variabilis

Full scientific name Acinetobacter variabilis Krizova et al. 2015

Synonyms (2)

"Acinetobacter refrigeratoris"
"Acinetobacter refrigeratorensis"

BacDive ID	Other strains from **Acinetobacter variabilis** (5)	Type strain
132198	A. variabilis strain Tjernberg & Ursing 151a, DSM 102977, ... (type strain)
145364	A. variabilis CCUG 28276
155953	A. variabilis CCUG 59763
155982	A. variabilis CCUG 59880
156607	A. variabilis CCUG 63497

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
125438	negative			99.5
36624	negative	oval-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
36624	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
36624	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
36624	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.5

Spore formation

@ref	Spore formation	Confidence
125438		94.653

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
36624		Sedlcany	Czech Republic	CZE	Europe
36624	Human, Conjunctiva	Sedlcany	Czech Republic	CZE	Europe	1998

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
36624	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Acin_sp_NIPH_899_V1 assembly for Acinetobacter variabilis NIPH 899	scaffold	GCA_000368385	1217710.3	2565956671	70346	61.21

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Acinetobacter variabilis NIPH 899
NCBI: GCA_000368385

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.50	no
125439	gram_stain	BacteriaNetⓘ	variable	74.60	no
125439	motility	BacteriaNetⓘ	yes	52.20	no
125439	spore_formation	BacteriaNetⓘ	no	78.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Acinetobacter sp. NIPH 899 NIPH 899
NCBI: GCA_000368385.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	96.93	no
125438	aerobic	aerobicⓘ	yes	87.86	no
125438	spore-forming	spore-formingⓘ	no	94.65	no
125438	thermophilic	thermophileⓘ	no	98.98	no
125438	flagellated	motile2+ⓘ	no	78.55	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	A comprehensive genomic analysis provides insights on the high environmental adaptability of Acinetobacter strains.	Zhao Y, Wei HM, Yuan JL, Xu L, Sun JQ.	Front Microbiol	10.3389/fmicb.2023.1177951	2023
Phylogeny	Acinetobacter variabilis sp. nov. (formerly DNA group 15 sensu Tjernberg & Ursing), isolated from humans and animals.	Krizova L, McGinnis J, Maixnerova M, Nemec M, Poirel L, Mingle L, Sedo O, Wolfgang W, Nemec A	Int J Syst Evol Microbiol	10.1099/ijs.0.000028	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36624	Collection of Institut Pasteur ; Curators of the CIP; CIP 110487
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acinetobacter variabilis (CIP 110487, NIPH 899)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000368385

Genome-based predictions

Predictions

Literature

Literature

References

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