Name: Actinomadura rayongensis RY35-68
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132197

Type strain:

Species: Actinomadura rayongensis

Strain Designation: RY35-68

Culture col. no.: DSM 102126, JCM 19830, PCU 332, TISTR 2211

Strain history: S. Tanasupawat; Chulalongkorn Univ., Thailand; RY35-68.

NCBI tax ID(s): 1429076 (species)

SI-ID 406651

DSM 102126

Special Collections

DSMZ
JCM

Section

Actinomadura rayongensis RY35-68 is a spore-forming bacterium that was isolated from Peat swamp forest soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura rayongensis**
	Full Scientific Name (LPSN)	Actinomadura rayongensis Phongsopitanun et al. 2015

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #23986]

Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23986]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #23986]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #23986]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23986]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23986]	Sample type/isolated from	Peat swamp forest soil
[Ref.: #23986]	Geographic location (country and/or sea, region)	Rayong Province
[Ref.: #23986]	Country	Thailand
[Ref.: #23986]	Country ISO 3 Code	THA
[Ref.: #23986]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Peat swamp forest soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rayong Province
[Ref.: #67770]	Country	Thailand
[Ref.: #67770]	Country ISO 3 Code	THA
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil
#Environmental	#Terrestrial	#Wetland (Swamp)
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB889544 (>99% sequence identity) for Actinomadura rayongensis from Microbeatlas

Aquatic Samples	15
Soil Samples	317
Animal Samples	38
Plant Samples	42
Total Samples	412

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23986]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23986]	Actinomadura rayongensis gene for 16S ribosomal RNA, partial sequence	AB889544	1418	GenBank ENA	1429076 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinomadura rayongensis DSM 102126	GCA_009831215	scaffold	GenBank ENA	1429076 tax ID	*
[Ref.: #66792]	Actinomadura rayongensis strain DSM 102126	1429076.3	wgs	PATRIC	1429076 tax ID	*

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GC-content

73.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomadura rayongensis DSM 102126 NCBI: GCA_009831215.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	87.174	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.087	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.241	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	88.105	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	86	no

Availability in culture collections External links

[Ref.: #23986]

Culture collection no.

DSM 102126, JCM 19830, PCU 332, TISTR 2211

[Ref.: #90551]

SI-ID 406651

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura rubteroloni sp. nov. and Actinomadura macrotermitis sp. nov., isolated from the gut of the fungus growing-termite Macrotermes natalensis.	Benndorf R, Martin K, Kufner M, de Beer ZW, Vollmers J, Kaster AK, Beemelmanns C	Int J Syst Evol Microbiol	10.1099/ijsem.0.004403	2020	*
Phylogeny	Actinomadura rayongensis sp. nov., isolated from peat swamp forest soil.	Phongsopitanun W, Tanasupawat S, Suwanborirux K, Ohkuma M, Kudo T	Int J Syst Evol Microbiol	10.1099/ijs.0.000033	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23986

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102126

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90551

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406651.1 )

* These data were automatically processed and therefore are not curated

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Actinomadura rayongensis DSM 102126

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