Name: Rhodanobacter glycinis MO64
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132171

Type strain:

Species: Rhodanobacter glycinis

Strain Designation: MO64

Culture col. no.: DSM 102797, ICMP 17626, NBRC 105007

Strain history: <- NBRC <- M. Madhaiyan, Tamil Nadu Agricultural University, Coimbatore, India; MO64

NCBI tax ID(s): 582702 (species)

SI-ID 406755

DSM 102797

Special Collections

DSMZ

Section

Rhodanobacter glycinis MO64 is a Gram-negative bacterium that was isolated from rhizoplane of field-grown soybean .

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Rhodanobacteraceae*
	Genus	*Rhodanobacter*
	Species	**Rhodanobacter glycinis**
	Full Scientific Name (LPSN)	Rhodanobacter glycinis Madhaiyan et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23960]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #23960]

Culture medium growth

[Ref.: #23960]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23960]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23960]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23960]	Sample type/isolated from	rhizoplane of field-grown soybean (Glycine max)
[Ref.: #23960]	Host species	Glycine max
[Ref.: #23960]	Geographic location (country and/or sea, region)	Coimbatore, Tamilnadu
[Ref.: #23960]	Country	India
[Ref.: #23960]	Country ISO 3 Code	IND
[Ref.: #23960]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizoplane

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU912469 (>99% sequence identity) for Rhodanobacter from Microbeatlas

Aquatic Samples	469
Soil Samples	476
Animal Samples	914
Plant Samples	39
Total Samples	1898

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23960]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23960]	Rhodanobacter glycinis strain MO64 16S ribosomal RNA gene, partial sequence	EU912469	1429	GenBank ENA	582702 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rhodanobacter glycinis MO64	GCA_900114325	scaffold	GenBank ENA	582702 tax ID	*
[Ref.: #66792]	Rhodanobacter glycinis MO64	2651870113	draft	JGI IMG/M	582702 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rhodanobacter glycinis MO64 NCBI: GCA_900114325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.786	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.293	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.916	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	51.137	no

Availability in culture collections External links

[Ref.: #23960]

Culture collection no.

DSM 102797, ICMP 17626, NBRC 105007

[Ref.: #90526]

SI-ID 406755

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Rhodanobacter glycinis sp. nov., a yellow-pigmented gammaproteobacterium isolated from the rhizoplane of field-grown soybean.	Madhaiyan M, Poonguzhali S, Saravanan VS, Kwon SW	Int J Syst Evol Microbiol	10.1099/ijs.0.055525-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23960

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102797

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90526

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406755.1 )

* These data were automatically processed and therefore are not curated

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