Name: Lutimonas saemankumensis SMK-142
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132172

Type strain:

Species: Lutimonas saemankumensis

Strain Designation: SMK-142

Culture col. no.: DSM 103928, CCUG 55329, KCTC 22171

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 483016 (species)

SI-ID 397164

DSM 103928, CCUG 55329

Special Collections

Section

Lutimonas saemankumensis SMK-142 is an aerobe, Gram-negative, ovoid-shaped bacterium that was isolated from tidal flat sediment.

Gram-negative
ovoid-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Lutimonas*
	Species	**Lutimonas saemankumensis**
	Full Scientific Name (LPSN)	Lutimonas saemankumensis (Yoon et al. 2008) Kim et al. 2014

Synonym

Aestuariicola saemankumensis

Information on morphological and physiological properties Morphology

[Ref.: #32575]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative

[Ref.: #32575]	Cell length	0.5-7 µm

[Ref.: #32575]	Cell width	0.3-0.5 µm

[Ref.: #32575]	Cell shape	ovoid-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32575]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #60531]

Incubation period

7 days

[Ref.: #32575]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23961]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #23961]

Culture medium growth

[Ref.: #23961]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23961]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #23961]	growth	28 °C
[Ref.: #32575]	growth	04-33 °C
[Ref.: #32575]	optimum	25 °C
[Ref.: #60531]	growth	25-30 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #32575]			optimum	07-08
[Ref.: #32575]			growth	5.5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32575]	Oxygen tolerance	aerobe
[Ref.: #60531]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32575]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32575]		NaCl		growth	0.5-4	%
[Ref.: #32575]		NaCl		optimum	2	%

[Ref.: #32575]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-6

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32575]		catalase	+	1.11.1.6
[Ref.: #32575]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23961]	Sample type/isolated from	tidal flat sediment
[Ref.: #23961]	Geographic location (country and/or sea, region)	Saemankum
[Ref.: #23961]	Country	Republic of Korea
[Ref.: #23961]	Country ISO 3 Code	KOR
[Ref.: #23961]	Continent	Asia

[Ref.: #60531]	Sample type/isolated from	Tidal flat sediment
[Ref.: #60531]	Sampling date	2005
[Ref.: #60531]	Geographic location (country and/or sea, region)	Saemankum,Yellow Sea
[Ref.: #60531]	Country	Republic of Korea
[Ref.: #60531]	Country ISO 3 Code	KOR
[Ref.: #60531]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From tideland
[Ref.: #67771]	Geographic location (country and/or sea, region)	Saemankum
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU239499 (>99% sequence identity) for Lutimonas saemankumensis from Microbeatlas

Aquatic Samples	3368
Soil Samples	59
Animal Samples	68
Plant Samples	12
Total Samples	3507

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23961]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23961]	Aestuariicola saemankumensis strain SMK-142 16S ribosomal RNA gene, partial sequence	EU239499	1482	GenBank ENA	483016 tax ID

[Ref.: #32575]

GC-content

37.2 mol%

Availability in culture collections External links

[Ref.: #23961]

Culture collection no.

DSM 103928, CCUG 55329, KCTC 22171

[Ref.: #90527]

SI-ID 397164

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Lutimonas halocynthiae sp. nov., isolated from a golden sea squirt (Halocynthia aurantium), reclassification of Aestuariicola saemankumensis as Lutimonas saemankumensis comb. nov. and emended description of the genus Lutimonas.	Kim YO, Park S, Nam BH, Jung YT, Kim DG, Bae KS, Yoon JH	Int J Syst Evol Microbiol	10.1099/ijs.0.059923-0	2014	*
Phylogeny	Aestuariicola saemankumensis gen. nov., sp. nov., a member of the family Flavobacteriaceae, isolated from tidal flat sediment.	Yoon JH, Kang SJ, Jung YT, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.65717-0	2008	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23961

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103928

#32575

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28790 (see below)

#60531 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55329
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90527

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397164.1 )

#28790

IJSEM 2126 2008 ( DOI 10.1099/ijs.0.65717-0 , PubMed 18768617 )

* These data were automatically processed and therefore are not curated

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