Name: Polymorphobacter multimanifer 262-7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132170

Type strain:

Species: Polymorphobacter multimanifer

Strain Designation: 262-7

Culture col. no.: DSM 102189, ATCC BAA-2413, JCM 18140

Strain history: T. Imanaka 262-7.

NCBI tax ID(s): 1070431 (species)

SI-ID 401552

DSM 102189

Section

Polymorphobacter multimanifer 262-7 is a mesophilic, Gram-negative bacterium that was isolated from crack of white rock.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingosinicellaceae*
	Genus	*Polymorphobacter*
	Species	**Polymorphobacter multimanifer**
	Full Scientific Name (LPSN)	Polymorphobacter multimanifer Fukuda et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.974

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23959]

Culture medium

POLYMORPHOBACTER MEDIUM (DSMZ Medium 1620)

[Ref.: #23959]

Culture medium growth

[Ref.: #23959]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23959]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23959]			growth	25 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #23959]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23959]	24308	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23959]	Sample type/isolated from	crack of white rock
[Ref.: #23959]	Geographic location (country and/or sea, region)	Skallen region
[Ref.: #23959]	Country	Antarctica
[Ref.: #23959]	Country ISO 3 Code	ATA
[Ref.: #23959]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Crack of white rock in the Skallen region of Antarctica
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23959]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23959]	Polymorphobacter multimanifer gene for 16S rRNA, partial sequence	AB649056	1458	ENA	1070431 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polymorphobacter multimanifer DSM 102189	GCA_014205635	scaffold	GenBank	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer JCM 18140	GCA_014647295	scaffold	GenBank	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer strain DSM 102189	1070431.3	wgs	PATRIC	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer strain JCM 18140	1070431.4	wgs	PATRIC	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer DSM 102189	2828297358	draft	JGI IMG/M	1070431 tax ID	*

[Ref.: #67770]

GC-content

68 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Polymorphobacter multimanifer DSM 102189 NCBI: GCA_014205635.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Polymorphobacter multimanifer DSM 102189 NCBI: GCA_014205635.1
[Ref.: #69480]	flagellated	no	85.665	no
[Ref.: #69480]	gram-positive	no	97.237	no
[Ref.: #69480]	anaerobic	no	99.175	no
[Ref.: #69480]	aerobic	yes	90.941	no
[Ref.: #69480]	halophile	no	91.035	no
[Ref.: #69480]	spore-forming	no	96.379	no
[Ref.: #69480]	glucose-util	yes	77.528	no
[Ref.: #69480]	thermophile	no	97.987	no
[Ref.: #69480]	motile	yes	52.951	no
[Ref.: #69480]	glucose-ferment	no	93.384	yes

Availability in culture collections External links

[Ref.: #23959]

Culture collection no.

DSM 102189, ATCC BAA-2413, JCM 18140

[Ref.: #90525]

SI-ID 401552

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polymorphobacter arshaanensis sp. nov., containing the photosynthetic gene pufML, isolated from a volcanic lake.	Phurbu D, Liu ZX, Liu HC, Lhamo Y, Yangzom P, Li AH, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.003880	2020	*
Phylogeny	Polymorphobacter glacialis sp. nov., isolated from ice core.	Xing T, Liu Y, Wang N, Xu B, Shen L, Liu K, Gu Z, Guo B, Zhou Y, Liu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001672	2017	*
Phylogeny	Polymorphobacter fuscus sp. nov., isolated from permafrost soil, and emended description of the genus Polymorphobacter.	Jia L, Feng X, Zheng Z, Han L, Hou X, Lu Z, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000514	2015	*
Phylogeny	Polymorphobacter multimanifer gen. nov., sp. nov., a polymorphic bacterium isolated from Antarctic white rock.	Fukuda W, Chino Y, Araki S, Kondo Y, Imanaka H, Kanai T, Atomi H, Imanaka T	Int J Syst Evol Microbiol	10.1099/ijs.0.050005-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23959

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102189

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90525

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401552.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Polymorphobacter multimanifer in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Polymorphobacter multimanifer DSM 102189

Polymorphobacter multimanifer DSM 102189

Change proposal

Change proposal