Name: Polymorphobacter multimanifer 262-7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132170

Type strain:

Species: Polymorphobacter multimanifer

Strain Designation: 262-7

Culture col. no.: DSM 102189, ATCC BAA-2413, JCM 18140

Strain history: T. Imanaka 262-7.

NCBI tax ID(s): 1070431 (species)

SI-ID 401552

DSM 102189

Special Collections

DSMZ
JCM

Section

Polymorphobacter multimanifer 262-7 is a Gram-negative bacterium that was isolated from crack of white rock.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingosinicellaceae*
	Genus	*Polymorphobacter*
	Species	**Polymorphobacter multimanifer**
	Full Scientific Name (LPSN)	Polymorphobacter multimanifer Fukuda et al. 2014

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %96.828

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23959]

Culture medium

POLYMORPHOBACTER MEDIUM (DSMZ Medium 1620)

[Ref.: #23959]

Culture medium growth

[Ref.: #23959]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23959]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #23959]			growth	25 °C
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.122

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23959]	24308	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23959]	Sample type/isolated from	crack of white rock
[Ref.: #23959]	Geographic location (country and/or sea, region)	Skallen region
[Ref.: #23959]	Country	Antarctica
[Ref.: #23959]	Country ISO 3 Code	ATA
[Ref.: #23959]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Crack of white rock in the Skallen region of Antarctica
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23959]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23959]	Polymorphobacter multimanifer gene for 16S rRNA, partial sequence	AB649056	1458	GenBank ENA	1070431 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Polymorphobacter multimanifer DSM 102189	GCA_014205635	scaffold	GenBank ENA	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer JCM 18140	GCA_014647295	scaffold	GenBank ENA	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer strain DSM 102189	1070431.3	wgs	PATRIC	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer strain JCM 18140	1070431.4	wgs	PATRIC	1070431 tax ID	*
[Ref.: #66792]	Polymorphobacter multimanifer DSM 102189	2828297358	draft	JGI IMG/M	1070431 tax ID	*

[Ref.: #67770]

GC-content

68 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Polymorphobacter multimanifer DSM 102189 NCBI: GCA_014205635.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Polymorphobacter multimanifer DSM 102189 NCBI: GCA_014205635.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.828	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.69	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.122	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.599	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.478	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	60.105	no

Availability in culture collections External links

[Ref.: #23959]

Culture collection no.

DSM 102189, ATCC BAA-2413, JCM 18140

[Ref.: #90525]

SI-ID 401552

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polymorphobacter arshaanensis sp. nov., containing the photosynthetic gene pufML, isolated from a volcanic lake.	Phurbu D, Liu ZX, Liu HC, Lhamo Y, Yangzom P, Li AH, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijsem.0.003880	2020	*
Phylogeny	Polymorphobacter glacialis sp. nov., isolated from ice core.	Xing T, Liu Y, Wang N, Xu B, Shen L, Liu K, Gu Z, Guo B, Zhou Y, Liu H	Int J Syst Evol Microbiol	10.1099/ijsem.0.001672	2017	*
Phylogeny	Polymorphobacter fuscus sp. nov., isolated from permafrost soil, and emended description of the genus Polymorphobacter.	Jia L, Feng X, Zheng Z, Han L, Hou X, Lu Z, Lv J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000514	2015	*
Phylogeny	Polymorphobacter multimanifer gen. nov., sp. nov., a polymorphic bacterium isolated from Antarctic white rock.	Fukuda W, Chino Y, Araki S, Kondo Y, Imanaka H, Kanai T, Atomi H, Imanaka T	Int J Syst Evol Microbiol	10.1099/ijs.0.050005-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23959

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102189

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90525

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401552.1 )

* These data were automatically processed and therefore are not curated

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Polymorphobacter multimanifer DSM 102189

Polymorphobacter multimanifer DSM 102189

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