Strain identifier
BacDive ID: 132171
Type strain: 
Species: Rhodanobacter glycinis
Strain Designation: MO64
Strain history: <- NBRC <- M. Madhaiyan, Tamil Nadu Agricultural University, Coimbatore, India; MO64
NCBI tax ID(s): 582702 (species)
version 9.1 (current version)
General
@ref: 23960
BacDive-ID: 132171
DSM-Number: 102797
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Rhodanobacter glycinis MO64 is a Gram-negative bacterium that was isolated from rhizoplane of field-grown soybean .
NCBI tax id
- NCBI tax id: 582702
- Matching level: species
strain history
- @ref: 23960
- history: <- NBRC <- M. Madhaiyan, Tamil Nadu Agricultural University, Coimbatore, India; MO64
doi: 10.13145/bacdive132171.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Rhodanobacter
- species: Rhodanobacter glycinis
- full scientific name: Rhodanobacter glycinis Madhaiyan et al. 2014
@ref: 23960
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Rhodanobacteraceae
genus: Rhodanobacter
species: Rhodanobacter glycinis
full scientific name: Rhodanobacter glycinis Madhaiyan et al. 2014
strain designation: MO64
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 98.5
Culture and growth conditions
culture medium
- @ref: 23960
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23960
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 23960
- sample type: rhizoplane of field-grown soybean (Glycine max)
- host species: Glycine max
- geographic location: Coimbatore, Tamilnadu
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizoplane |
taxonmaps
- @ref: 69479
- File name: preview.99_5025.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_114;96_316;97_413;98_3758;99_5025&stattab=map
- Last taxonomy: Rhodanobacter
- 16S sequence: EU912469
- Sequence Identity:
- Total samples: 1898
- soil counts: 476
- aquatic counts: 469
- animal counts: 914
- plant counts: 39
Safety information
risk assessment
- @ref: 23960
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23960
- description: Rhodanobacter glycinis strain MO64 16S ribosomal RNA gene, partial sequence
- accession: EU912469
- length: 1429
- database: nuccore
- NCBI tax ID: 582702
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodanobacter glycinis MO64 | GCA_900114325 | scaffold | ncbi | 582702 |
| 66792 | Rhodanobacter glycinis MO64 | 2651870113 | draft | img | 582702 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.786 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 84.293 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.916 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 51.137 | no |
External links
@ref: 23960
culture collection no.: DSM 102797, ICMP 17626, NBRC 105007
straininfo link
- @ref: 90526
- straininfo: 406755
literature
- topic: Phylogeny
- Pubmed-ID: 24651305
- title: Rhodanobacter glycinis sp. nov., a yellow-pigmented gammaproteobacterium isolated from the rhizoplane of field-grown soybean.
- authors: Madhaiyan M, Poonguzhali S, Saravanan VS, Kwon SW
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.055525-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Soybeans/*microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23960 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102797 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102797) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90526 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406755.1 |