Name: Halalkalibacter oceani SW109
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132157

Type strain:

Species: Halalkalibacter oceani

Strain Designation: SW109

Culture col. no.: DSM 100579, CGMCC 1.12347

Strain history: <- L. Song, Inst. Microbiol., Chinese Acad. Sci., Beijing, China; SW109

NCBI tax ID(s): 1653776 (species)

SI-ID 397121

DSM 100579

Special Collections

Section

Halalkalibacter oceani SW109 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from seawater.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Halalkalibacter*
	Species	**Halalkalibacter oceani**
	Full Scientific Name (LPSN)	Halalkalibacter oceani (Song et al. 2016) Joshi et al. 2022

	Synonym	Alkalihalobacillus oceani
	Synonym	Bacillus oceani

Information on morphological and physiological properties Morphology

[Ref.: #43775]	Gram stain	positive

[Ref.: #43775]	Cell length	1.5-6 µm

[Ref.: #43775]	Cell width	0.5-0.7 µm

[Ref.: #43775]	Cell shape	rod-shaped

[Ref.: #43775]	Motility	yes

[Ref.: #43775]	Flagellum arrangement	peritrichous

[Ref.: #43775]	Colony shape	circular
[Ref.: #43775]	Incubation period	3 days
[Ref.: #43775]	Cultivation medium used	Marine agar 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43775]

Culture medium

Marine agar (MA)

[Ref.: #43775]

Culture medium growth

[Ref.: #23946]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #23946]

Culture medium growth

[Ref.: #23946]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23946]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #23946]	growth	30 °C
[Ref.: #43775]	growth	4-50 °C
[Ref.: #43775]	optimum	30-32 °C

	pH	Kind of pH		pH
[Ref.: #43775]			optimum	7.5
[Ref.: #43775]			growth	5.5-10.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43775]

Oxygen tolerance

obligate aerobe

[Ref.: #43775]	Spore description	ellipsoidal spores in the centre or subpolar area without swollen sporangia
[Ref.: #43775]	Type of spore	endospore
[Ref.: #43775]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43775]		NaCl		growth	0-9	%(w/v)
[Ref.: #43775]		NaCl		optimum	2.5-3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43775]	(S)-lactate ChEBI	+	respiration
[Ref.: #43775]	acetate ChEBI	+	respiration
[Ref.: #43775]	casein	-	hydrolysis
[Ref.: #43775]	cellobiose ChEBI	-	respiration
[Ref.: #43775]	citrate ChEBI	+	respiration
[Ref.: #43775]	D-fructose ChEBI	+	respiration
[Ref.: #43775]	D-galactose ChEBI	-	respiration
[Ref.: #43775]	D-glucose ChEBI	+	builds acid from
[Ref.: #43775]	D-glucose ChEBI	+	respiration
[Ref.: #43775]	D-mannitol ChEBI	+	respiration
[Ref.: #43775]	D-mannose ChEBI	-	respiration
[Ref.: #43775]	D-serine ChEBI	-	respiration
[Ref.: #43775]	D-sorbitol ChEBI	-	respiration
[Ref.: #43775]	esculin ChEBI	-	hydrolysis
[Ref.: #43775]	formate ChEBI	-	respiration
[Ref.: #43775]	gelatin ChEBI	-	hydrolysis
[Ref.: #43775]	glycerol ChEBI	-	respiration
[Ref.: #43775]	L-alanine ChEBI	+	respiration
[Ref.: #43775]	L-arabinose ChEBI	+	respiration
[Ref.: #43775]	L-aspartate ChEBI	-	respiration
[Ref.: #43775]	L-glutamate ChEBI	-	respiration
[Ref.: #43775]	L-rhamnose ChEBI	-	respiration
[Ref.: #43775]	lactose ChEBI	-	respiration
[Ref.: #43775]	maltose ChEBI	-	respiration
[Ref.: #43775]	myo-inositol ChEBI	-	respiration
[Ref.: #43775]	nitrate ChEBI	+	reduction
[Ref.: #43775]	pectin ChEBI	-	hydrolysis
[Ref.: #43775]	propionate ChEBI	-	respiration
[Ref.: #43775]	raffinose ChEBI	-	respiration
[Ref.: #43775]	starch ChEBI	-	hydrolysis
[Ref.: #43775]	sucrose ChEBI	-	respiration
[Ref.: #43775]	trehalose ChEBI	+	respiration
[Ref.: #43775]	tryptophan ChEBI	-	energy source
[Ref.: #43775]	tween 40 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43775]	acetoin ChEBI	yes
[Ref.: #43775]	hydrogen sulfide ChEBI	no
[Ref.: #43775]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #43775]		acetoin ChEBI	+
[Ref.: #43775]		indole ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #43775]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43775]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43775]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43775]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43775]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43775]	beta-galactosidase	-	3.2.1.23
[Ref.: #43775]	beta-glucosidase	-	3.2.1.21
[Ref.: #43775]	catalase	+	1.11.1.6
[Ref.: #43775]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43775]	esterase (C 4)	+
[Ref.: #43775]	esterase Lipase (C 8)	+
[Ref.: #43775]	leucine aminopeptidase	+	3.4.1.1
[Ref.: #43775]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43775]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43775]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43775]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43775]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23946]	Sample type/isolated from	seawater
[Ref.: #23946]	Geographic location (country and/or sea, region)	(63° 59' 39'' E 5° 59' 40'' N) at a water depth of 1200 m
[Ref.: #23946]	Country	Indian Ocean
[Ref.: #23946]	Continent	Asia
[Ref.: #23946]	Geographic location	5.9944°/63.9942°

[Ref.: #43775]	Sample type/isolated from	A seawater sample collected from the north-west Indian Ocean (depth: 1200 m)
[Ref.: #43775]	Geographic location (country and/or sea, region)	Indian Ocean
[Ref.: #43775]	Geographic location	5.9940°/63.9940°
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR611043 (>99% sequence identity) for Alkalihalobacillus oceani subclade from Microbeatlas

Aquatic Samples	26
Soil Samples	25
Animal Samples	66
Plant Samples	1
Total Samples	118

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23946]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23946]	Halalkalibacter oceani strain SW109 16S ribosomal RNA gene, partial sequence	KR611043	1553	GenBank ENA	1653776 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus oceani DSM 100579	2926558313	draft	JGI IMG/M	1653776 tax ID	*

[Ref.: #23946]

GC-content

46.3 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #23946]

Culture collection no.

DSM 100579, CGMCC 1.12347

[Ref.: #90513]

SI-ID 397121

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus oceani sp. nov., isolated from seawater.	Song L, Liu H, Wang J, Huang Y, Dai X, Han X, Zhou Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000793	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23946

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100579

#43775

Lei Song, Hongcan Liu, Jian Wang, Ying Huang, Xin Dai, Xiqiu Han, Yuguang Zhou: Bacillus oceani sp. nov., isolated from seawater. IJSEM 66: 796 - 800 2016 ( DOI 10.1099/ijsem.0.000793 , PubMed 26612462 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90513

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397121.1 )

* These data were automatically processed and therefore are not curated

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