Strain identifier

BacDive ID: 132157

Type strain: Yes

Species: Halalkalibacter oceani

Strain Designation: SW109

Strain history: <- L. Song, Inst. Microbiol., Chinese Acad. Sci., Beijing, China; SW109

NCBI tax ID(s): 1653776 (species)

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General

@ref: 23946

BacDive-ID: 132157

DSM-Number: 100579

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, Gram-positive, motile, rod-shaped, colony-forming

description: Halalkalibacter oceani SW109 is an obligate aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from seawater.

NCBI tax id

  • NCBI tax id: 1653776
  • Matching level: species

strain history

  • @ref: 23946
  • history: <- L. Song, Inst. Microbiol., Chinese Acad. Sci., Beijing, China; SW109

doi: 10.13145/bacdive132157.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Halalkalibacter
  • species: Halalkalibacter oceani
  • full scientific name: Halalkalibacter oceani (Song et al. 2016) Joshi et al. 2022

  • synonyms

    @refsynonym
    20215Alkalihalobacillus oceani
    20215Bacillus oceani

@ref: 23946

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Caryophanales

family: Bacillaceae

genus: Halalkalibacter

species: Halalkalibacter oceani

full scientific name: Halalkalibacter oceani (Song et al. 2016) Joshi et al. 2022

strain designation: SW109

type strain: yes

Morphology

cell morphology

  • @ref: 43775
  • gram stain: positive
  • cell length: 1.5-6 µm
  • cell width: 0.5-0.7 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

  • @ref: 43775
  • colony shape: circular
  • incubation period: 3 days
  • medium used: Marine agar 2216

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43775Marine agar (MA)yes
23946BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperature
23946positivegrowth30
43775positivegrowth4-50
43775positiveoptimum30-32

culture pH

@refabilitytypepHPH range
43775positivegrowth5.5-10.5alkaliphile
43775positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 43775
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43775
  • spore description: ellipsoidal spores in the centre or subpolar area without swollen sporangia
  • type of spore: endospore
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
43775NaClpositivegrowth0-9 %(w/v)
43775NaClpositiveoptimum2.5-3 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4377527897tryptophan-energy source
43775casein-hydrolysis
437754853esculin-hydrolysis
437755291gelatin-hydrolysis
4377517309pectin-hydrolysis
4377528017starch-hydrolysis
4377553423tween 40-hydrolysis
4377517057cellobiose-respiration
4377512936D-galactose-respiration
4377516024D-mannose-respiration
4377516523D-serine-respiration
4377517924D-sorbitol-respiration
4377515740formate-respiration
4377517754glycerol-respiration
4377517268myo-inositol-respiration
4377529991L-aspartate-respiration
4377529985L-glutamate-respiration
4377562345L-rhamnose-respiration
4377517716lactose-respiration
4377517306maltose-respiration
4377517272propionate-respiration
4377516634raffinose-respiration
4377517992sucrose-respiration
4377517634D-glucose+builds acid from
4377517632nitrate+reduction
4377516651(S)-lactate+respiration
4377530089acetate+respiration
4377516947citrate+respiration
4377515824D-fructose+respiration
4377517634D-glucose+respiration
4377516899D-mannitol+respiration
4377516977L-alanine+respiration
4377530849L-arabinose+respiration
4377527082trehalose+respiration

metabolite production

@refChebi-IDmetaboliteproduction
4377516136hydrogen sulfideno
4377535581indoleno
4377515688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
4377515688acetoin+
4377535581indole-

enzymes

@refvalueactivityec
43775cytochrome oxidase+1.9.3.1
43775catalase+1.11.1.6
43775arginine dihydrolase-3.5.3.6
43775lysine decarboxylase-4.1.1.18
43775ornithine decarboxylase-4.1.1.17
43775alkaline phosphatase+3.1.3.1
43775esterase (C 4)+
43775esterase Lipase (C 8)+
43775leucine aminopeptidase+3.4.1.1
43775alpha-chymotrypsin+3.4.21.1
43775naphthol-AS-BI-phosphohydrolase+
43775alpha-glucosidase+3.2.1.20
43775tryptophan deaminase-4.1.99.1
43775valine arylamidase-
43775alpha-galactosidase-3.2.1.22
43775beta-galactosidase-3.2.1.23
43775beta-glucosidase-3.2.1.21

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountrycontinentlatitudelongitude
23946seawater(63° 59' 39'' E 5° 59' 40'' N) at a water depth of 1200 mIndian OceanAsia5.994463.9942
43775A seawater sample collected from the north-west Indian Ocean (depth: 1200 m)Indian Ocean5.99463.994

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_63908.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_27816;97_35024;98_45211;99_63908&stattab=map
  • Last taxonomy: Alkalihalobacillus oceani subclade
  • 16S sequence: KR611043
  • Sequence Identity:
  • Total samples: 118
  • soil counts: 25
  • aquatic counts: 26
  • animal counts: 66
  • plant counts: 1

Safety information

risk assessment

  • @ref: 23946
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23946
  • description: Halalkalibacter oceani strain SW109 16S ribosomal RNA gene, partial sequence
  • accession: KR611043
  • length: 1553
  • database: nuccore
  • NCBI tax ID: 1653776

Genome sequences

  • @ref: 66792
  • description: Bacillus oceani DSM 100579
  • accession: 2926558313
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1653776

GC content

  • @ref: 23946
  • GC-content: 46.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 23946

culture collection no.: DSM 100579, CGMCC 1.12347

straininfo link

  • @ref: 90513
  • straininfo: 397121

literature

  • topic: Phylogeny
  • Pubmed-ID: 26612462
  • title: Bacillus oceani sp. nov., isolated from seawater.
  • authors: Song L, Liu H, Wang J, Huang Y, Dai X, Han X, Zhou Y
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000793
  • year: 2015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23946Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100579Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100579)
43775Lei Song, Hongcan Liu, Jian Wang, Ying Huang, Xin Dai, Xiqiu Han, Yuguang ZhouBacillus oceani sp. nov., isolated from seawater10.1099/ijsem.0.000793IJSEM 66: 796-800 201626612462
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90513Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397121.1