Name: Rhizobium jaguaris SJP1-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132156

Type strain:

Species: Rhizobium jaguaris

Strain Designation: SJP1-2

Culture col. no.: DSM 104287, ATCC BAA-2445, CIP 110453, CCGE 525

Strain history: CIP <- 2012, E. Martinez-Romero, CCG, Cuernavaca, Morelox, Mexico: strain CCGE 525

NCBI tax ID(s): 1312183 (species)

SI-ID 390756

ATCC BAA-2445, CIP 110453

Special Collections

DSMZ
CIP

Section

Rhizobium jaguaris SJP1-2 is a bacterium that was isolated from root nitrogen-fixing nodules of Calliandra grandiflora.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Rhizobiaceae*
	Genus	*Rhizobium*
	Species	**Rhizobium jaguaris**
	Full Scientific Name (LPSN)	Rhizobium jaguaris Rincón-Rosales et al. 2013

Information on culture and growth conditions Culture and growth conditions

[Ref.: #40757]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40757]

Culture medium growth

[Ref.: #40757]

Culture medium composition

expand / minimize

[Ref.: #23945]

Culture medium

RHIZOBIUM MEDIUM (DSMZ Medium 98)

[Ref.: #23945]

Culture medium growth

[Ref.: #23945]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23945]

Culture medium composition

expand / minimize

[Ref.: #120304]

Culture medium

CIP Medium 72

[Ref.: #120304]

Culture medium growth

[Ref.: #120304]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #23945]			growth	25 °C
[Ref.: #40757]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	+	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #23945]	24534	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+/-	-	-	+/-	+	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23945]	Sample type/isolated from	root nitrogen-fixing nodules of Calliandra grandiflora
[Ref.: #23945]	Host species	Calliandra grandiflora
[Ref.: #23945]	Geographic location (country and/or sea, region)	Chiapas
[Ref.: #23945]	Country	Mexico
[Ref.: #23945]	Country ISO 3 Code	MEX
[Ref.: #23945]	Continent	North America

[Ref.: #120304]	Sample type/isolated from	Plant, Calliandra grandiflora root nitrogen-fixing nodules
[Ref.: #120304]	Geographic location (country and/or sea, region)	Chiapas
[Ref.: #120304]	Country	Mexico
[Ref.: #120304]	Country ISO 3 Code	MEX
[Ref.: #120304]	Continent	North America
[Ref.: #120304]	Isolation date	2011
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root nodule

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX855169 (>99% sequence identity) for Rhizobiaceae from Microbeatlas

Aquatic Samples	403
Soil Samples	3171
Animal Samples	1252
Plant Samples	1013
Total Samples	5839

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23945]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120304]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23945]	Rhizobium jaguaris strain CCGE525 16S ribosomal RNA gene, partial sequence	JX855169	1379	GenBank ENA	1312183 tax ID

Availability in culture collections External links

[Ref.: #23945]

Culture collection no.

DSM 104287, ATCC BAA-2445, CIP 110453, CCGE 525

[Ref.: #90512]

SI-ID 390756

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Rhizobium jaguaris CCGE525(T), a Strain Isolated from Calliandra grandiflora Nodules from a Rain Forest in Mexico.	Servin-Garciduenas LE, Guerrero G, Rogel-Hernandez MA, Martinez-Romero E	Microbiol Resour Announc	10.1128/MRA.01584-18	2019	*
Phylogeny	Rhizobium calliandrae sp. nov., Rhizobium mayense sp. nov. and Rhizobium jaguaris sp. nov., rhizobial species nodulating the medicinal legume Calliandra grandiflora.	Rincon-Rosales R, Villalobos-Escobedo JM, Rogel MA, Martinez J, Ormeno-Orrillo E, Martinez-Romero E	Int J Syst Evol Microbiol	10.1099/ijs.0.048249-0	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23945

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104287

#40757 ; Curators of the CIP;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90512

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID390756.1 )

#120304 Collection of Institut Pasteur ; Curators of the CIP; CIP 110453
* These data were automatically processed and therefore are not curated

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