Name: Mycobacterium alsense TB 1906
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131575

Type strain:

Species: Mycobacterium alsense

Strain Designation: TB 1906

Culture col. no.: DSM 45230, CCUG 56586, JCM 32215, CCUG 55640

Strain history: CCUG 56586 <-- E. Richter; Natl. Ref. Center for Mycobacteria, Res. Center Borstel, Germany; TB 1906 <-- S. Schubert; Univ. of Kiel, Germany.

NCBI tax ID(s): 324058 (species)

SI-ID 397635

DSM 45230, CCUG 56586, CCUG 55640

Section

Mycobacterium alsense TB 1906 is a mesophilic bacterium that was isolated from sputum of patient with pulmonary disorder.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium alsense**
	Full Scientific Name (LPSN)	Mycobacterium alsense Tortoli et al. 2016

Synonym

"Mycobacterium alsiense"

Information on morphological and physiological properties Morphology

[Ref.: #44061]	Motility	no

[Ref.: #44061]	Colony color	pale-yellow
[Ref.: #44061]	Incubation period	14 days
[Ref.: #44061]	Cultivation medium used	solid media

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44061]

Culture medium

solid media

[Ref.: #44061]

Culture medium growth

[Ref.: #22802]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #22802]

Culture medium growth

[Ref.: #22802]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22802]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #22802]	growth	37 °C
[Ref.: #44061]	growth	25-37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #22802]	Temperature range	mesophilic
[Ref.: #44061]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44061]	Type of spore	spore
[Ref.: #44061]	Ability of spore formation	no

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44061]		nitrate ChEBI	-	reduction
[Ref.: #44061]		tween 80 ChEBI	-	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #44061]	arylsulfatase	-	3.1.6.1
[Ref.: #44061]	beta-glucosidase	-	3.2.1.21
[Ref.: #44061]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22802]	Sample type/isolated from	sputum of patient with pulmonary disorder
[Ref.: #22802]	Country	Denmark
[Ref.: #22802]	Country ISO 3 Code	DNK
[Ref.: #22802]	Continent	Europe

[Ref.: #44061]	Sample type/isolated from	sputum of patients with pulmonary disorder
[Ref.: #44061]	Sampling date	2007
[Ref.: #44061]	Country	Denmark
[Ref.: #44061]	Country ISO 3 Code	DNK
[Ref.: #44061]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Sputum of a patient with a pulmonary disorder
[Ref.: #67770]	Country	Denmark
[Ref.: #67770]	Country ISO 3 Code	DNK
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Oral cavity and airways	#Airways
#Host Body Product	#Fluids	#Sputum
#Infection	#Patient	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22802]	Mycobacterium alsense 16S rRNA gene, type strain TB 1906T	AJ938169	1535	ENA	324058 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mycobacterium alsense DSM 45230	GCA_002086635	contig	GenBank	324058 tax ID
[Ref.: #66792]	Mycobacterium alsense strain DSM 45230	324058.3	wgs	PATRIC	324058 tax ID	*
[Ref.: #66792]	Mycobacterium alsense CCUG 55640	GCA_025823205	contig	GenBank	324058 tax ID	*

[Ref.: #67770]

GC-content

69.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium alsense strain DSM 45230 PATRIC: 324058.3
[Ref.: #69480]	gram-positive	yes	90.54	no
[Ref.: #69480]	anaerobic	no	98.736	no
[Ref.: #69480]	halophile	no	91.435	no
[Ref.: #69480]	spore-forming	no	87.665	yes
[Ref.: #69480]	glucose-util	yes	67.547	no
[Ref.: #69480]	motile	no	94.656	no
[Ref.: #69480]	flagellated	no	98.881	yes
[Ref.: #69480]	aerobic	yes	88.921	no
[Ref.: #69480]	thermophile	no	96.401	yes
[Ref.: #69480]	glucose-ferment	no	90.301	no

Availability in culture collections External links

[Ref.: #22802]

Culture collection no.

DSM 45230, CCUG 56586, JCM 32215, CCUG 55640

[Ref.: #89981]

SI-ID 397635

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens.	Tortoli E, Richter E, Borroni E, Cabibbe AM, Capitolo E, Cittaro D, Engel R, Hendricks O, Hillemann D, Kristiansen JE, Mariottini A, Schubert S, Cirillo DM	Int J Syst Evol Microbiol	10.1099/ijsem.0.000744	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22802

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45230

#44061

Enrico Tortoli, Elvira Richter, Emanuele Borroni, Andrea M. Cabibbe, Eleonora Capitolo, Davide Cittaro, Regina Engel, Oliver Hendricks, Doris Hillemann, Jette E. Kristiansen, Alessandro Mariottini, Sabine Schubert and Daniela M. Cirillo: Mycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens. IJSEM 66: 450 - 455 2016 ( DOI 10.1099/ijsem.0.000744 , PubMed 26545358 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89981

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397635.1 )

* These data were automatically processed and therefore are not curated

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Mycobacterium alsense strain DSM 45230

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