Strain identifier
BacDive ID: 131575
Type strain: 
Species: Mycobacterium alsense
Strain Designation: TB 1906
Strain history: CCUG 56586 <-- E. Richter; Natl. Ref. Center for Mycobacteria, Res. Center Borstel, Germany; TB 1906 <-- S. Schubert; Univ. of Kiel, Germany.
NCBI tax ID(s): 324058 (species)
version 9.1 (current version)
General
@ref: 22802
BacDive-ID: 131575
DSM-Number: 45230
keywords: genome sequence, 16S sequence, Bacteria
description: Mycobacterium alsense TB 1906 is a bacterium that was isolated from sputum of patient with pulmonary disorder.
NCBI tax id
- NCBI tax id: 324058
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22802 | <- E. Richter,Forschungszentrum Borstel; TB 1906 <- Microbiology, Univ. Kiel <- S. Schubert |
| 67770 | CCUG 56586 <-- E. Richter; Natl. Ref. Center for Mycobacteria, Res. Center Borstel, Germany; TB 1906 <-- S. Schubert; Univ. of Kiel, Germany. |
doi: 10.13145/bacdive131575.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium alsense
- full scientific name: Mycobacterium alsense Tortoli et al. 2016
synonyms
- @ref: 20215
- synonym: Mycobacterium alsiense
@ref: 22802
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium alsense
full scientific name: Mycobacterium alsense Tortoli et al. 2016 emend. Nouioui et al. 2018
strain designation: TB 1906
type strain: yes
Morphology
cell morphology
- @ref: 44061
- motility: no
colony morphology
- @ref: 44061
- colony color: pale-yellow
- incubation period: 14 days
- medium used: solid media
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 44061 | solid media | yes | ||
| 22802 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 44061 | positive | growth | 25-37 |
| 22802 | positive | growth | 37 |
| 67770 | positive | growth | 37 |
Physiology and metabolism
spore formation
- @ref: 44061
- type of spore: spore
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 44061 | 53426 | tween 80 | - | hydrolysis |
| 44061 | 17632 | nitrate | - | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 44061 | arylsulfatase | - | 3.1.6.1 |
| 44061 | urease | - | 3.5.1.5 |
| 44061 | beta-glucosidase | - | 3.2.1.21 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|
| 22802 | sputum of patient with pulmonary disorder | Denmark | DNK | Europe | |
| 44061 | sputum of patients with pulmonary disorder | Denmark | DNK | Europe | 2007 |
| 67770 | Sputum of a patient with a pulmonary disorder | Denmark | DNK | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Oral cavity and airways | #Airways |
| #Host Body Product | #Fluids | #Sputum |
| #Infection | #Patient |
Sequence information
16S sequences
- @ref: 22802
- description: Mycobacterium alsense 16S rRNA gene, type strain TB 1906T
- accession: AJ938169
- length: 1535
- database: nuccore
- NCBI tax ID: 324058
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycobacterium alsense strain DSM 45230 | 324058.3 | wgs | patric | 324058 |
| 67770 | Mycobacterium alsense DSM 45230 | GCA_002086635 | contig | ncbi | 324058 |
| 66792 | Mycobacterium alsense CCUG 55640 | GCA_025823205 | contig | ncbi | 324058 |
GC content
- @ref: 67770
- GC-content: 69.3
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 87.489 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 96.02 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 63.797 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 73.939 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.499 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 87 | yes |
External links
@ref: 22802
culture collection no.: DSM 45230, CCUG 56586, JCM 32215, CCUG 55640
straininfo link
- @ref: 89981
- straininfo: 397635
literature
- topic: Phylogeny
- Pubmed-ID: 26545358
- title: Mycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens.
- authors: Tortoli E, Richter E, Borroni E, Cabibbe AM, Capitolo E, Cittaro D, Engel R, Hendricks O, Hillemann D, Kristiansen JE, Mariottini A, Schubert S, Cirillo DM
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.000744
- year: 2015
- mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Respiratory Tract Diseases/*microbiology, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 22802 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45230 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45230) | |||
| 44061 | Enrico Tortoli, Elvira Richter, Emanuele Borroni, Andrea M. Cabibbe, Eleonora Capitolo, Davide Cittaro, Regina Engel, Oliver Hendricks, Doris Hillemann, Jette E. Kristiansen, Alessandro Mariottini, Sabine Schubert and Daniela M. Cirillo | Mycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens | 10.1099/ijsem.0.000744 | IJSEM 66: 450-455 2016 | 26545358 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 89981 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397635.1 |