Strain identifier

BacDive ID: 131575

Type strain: Yes

Species: Mycobacterium alsense

Strain Designation: TB 1906

Strain history: CCUG 56586 <-- E. Richter; Natl. Ref. Center for Mycobacteria, Res. Center Borstel, Germany; TB 1906 <-- S. Schubert; Univ. of Kiel, Germany.

NCBI tax ID(s): 324058 (species)

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General

@ref: 22802

BacDive-ID: 131575

DSM-Number: 45230

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Mycobacterium alsense TB 1906 is a mesophilic bacterium that was isolated from sputum of patient with pulmonary disorder.

NCBI tax id

  • NCBI tax id: 324058
  • Matching level: species

strain history

@refhistory
22802<- E. Richter,Forschungszentrum Borstel; TB 1906 <- Microbiology, Univ. Kiel <- S. Schubert
67770CCUG 56586 <-- E. Richter; Natl. Ref. Center for Mycobacteria, Res. Center Borstel, Germany; TB 1906 <-- S. Schubert; Univ. of Kiel, Germany.

doi: 10.13145/bacdive131575.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Mycobacteriaceae
  • genus: Mycobacterium
  • species: Mycobacterium alsense
  • full scientific name: Mycobacterium alsense Tortoli et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Mycobacterium alsiense

@ref: 22802

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Mycobacteriaceae

genus: Mycobacterium

species: Mycobacterium alsense

full scientific name: Mycobacterium alsense Tortoli et al. 2016 emend. Nouioui et al. 2018

strain designation: TB 1906

type strain: yes

Morphology

cell morphology

  • @ref: 44061
  • motility: no

colony morphology

  • @ref: 44061
  • colony color: pale-yellow
  • incubation period: 14 days
  • medium used: solid media

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
44061solid mediayes
22802MIDDLEBROOK MEDIUM (DSMZ Medium 645)yeshttps://mediadive.dsmz.de/medium/645Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water

culture temp

@refgrowthtypetemperaturerange
44061positivegrowth25-37mesophilic
22802positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

spore formation

  • @ref: 44061
  • type of spore: spore
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4406153426tween 80-hydrolysis
4406117632nitrate-reduction

enzymes

@refvalueactivityec
44061arylsulfatase-3.1.6.1
44061urease-3.5.1.5
44061beta-glucosidase-3.2.1.21

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
22802sputum of patient with pulmonary disorderDenmarkDNKEurope
44061sputum of patients with pulmonary disorderDenmarkDNKEurope2007
67770Sputum of a patient with a pulmonary disorderDenmarkDNKEurope

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Oral cavity and airways#Airways
#Host Body Product#Fluids#Sputum
#Infection#Patient

Sequence information

16S sequences

  • @ref: 22802
  • description: Mycobacterium alsense 16S rRNA gene, type strain TB 1906T
  • accession: AJ938169
  • length: 1535
  • database: ena
  • NCBI tax ID: 324058

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mycobacterium alsense strain DSM 45230324058.3wgspatric324058
67770Mycobacterium alsense DSM 45230GCA_002086635contigncbi324058
66792Mycobacterium alsense CCUG 55640GCA_025823205contigncbi324058

GC content

  • @ref: 67770
  • GC-content: 69.3
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveyes90.54no
anaerobicno98.736no
halophileno91.435no
spore-formingno87.665yes
glucose-utilyes67.547no
motileno94.656no
flagellatedno98.881yes
aerobicyes88.921no
thermophileno96.401yes
glucose-fermentno90.301no

External links

@ref: 22802

culture collection no.: DSM 45230, CCUG 56586, JCM 32215, CCUG 55640

straininfo link

  • @ref: 89981
  • straininfo: 397635

literature

  • topic: Phylogeny
  • Pubmed-ID: 26545358
  • title: Mycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens.
  • authors: Tortoli E, Richter E, Borroni E, Cabibbe AM, Capitolo E, Cittaro D, Engel R, Hendricks O, Hillemann D, Kristiansen JE, Mariottini A, Schubert S, Cirillo DM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000744
  • year: 2015
  • mesh: Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Humans, Molecular Sequence Data, Mycobacterium/*classification/genetics/isolation & purification, Mycobacterium Infections/*microbiology, Mycolic Acids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Respiratory Tract Diseases/*microbiology, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22802Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45230Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45230)
44061Enrico Tortoli, Elvira Richter, Emanuele Borroni, Andrea M. Cabibbe, Eleonora Capitolo, Davide Cittaro, Regina Engel, Oliver Hendricks, Doris Hillemann, Jette E. Kristiansen, Alessandro Mariottini, Sabine Schubert and Daniela M. CirilloMycobacterium alsense sp. nov., a scotochromogenic slow grower isolated from clinical respiratory specimens10.1099/ijsem.0.000744IJSEM 66: 450-455 201626545358
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
89981Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397635.1