Name: Nocardia zapadnayensis FMN18
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131550

Type strain:

Species: Nocardia zapadnayensis

Strain Designation: FMN18

Culture col. no.: DSM 45872, KCTC 29234

Strain history: <- F. Ozdemir Kocak, Bilecik Seyh Edebali University, Turkey; FMN18

NCBI tax ID(s): 1124754 (species)

SI-ID 401407

DSM 45872

Special Collections

Section

Nocardia zapadnayensis FMN18 is a bacterium that was isolated from soil.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Nocardiaceae*
	Genus	*Nocardia*
	Species	**Nocardia zapadnayensis**
	Full Scientific Name (LPSN)	Nocardia zapadnayensis Ozdemir-Kocak et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69451]	Colony color	Colourless
[Ref.: #69451]	Cultivation medium used	ISP 3

[Ref.: #69451]	Colony color	Beige (1001)
[Ref.: #69451]	Cultivation medium used	ISP 2

[Ref.: #69451]	Colony color	Beige (1001)
[Ref.: #69451]	Cultivation medium used	suter with tyrosine

[Ref.: #69451]	Colony color	Ivory (1014)
[Ref.: #69451]	Cultivation medium used	ISP 6

[Ref.: #69451]	Colony color	Ivory (1014)
[Ref.: #69451]	Cultivation medium used	suter without tyrosine

[Ref.: #69451]	Colony color	Light ivory (1015)
[Ref.: #69451]	Cultivation medium used	ISP 5

[Ref.: #69451]	Colony color	Light ivory (1015)
[Ref.: #69451]	Cultivation medium used	ISP 7

[Ref.: #69451]	Colony color	Pastel yellow (1034)
[Ref.: #69451]	Cultivation medium used	ISP 4

[Ref.: #69451]	Pigment production	no
[Ref.: #69451]	Pigment name	Melanin
[Ref.: #69451]	Pigment production	yes
[Ref.: #69451]	Pigmentation color	Ivory (1014), beige (1001)
[Ref.: #69451]	Pigment name	soluble pigment

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	ISP 2

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	ISP 3

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	ISP 4

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	ISP 5

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	ISP 6

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	ISP 7

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69451]	Multicellular complex forming ability	no
[Ref.: #69451]	Multicellular complex name	Aerial mycelium
[Ref.: #69451]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #69451]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69451]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69451]

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69451]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22777]

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

[Ref.: #22777]

Culture medium growth

[Ref.: #22777]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22777]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22777]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69451]		NaCl		growth	0-7.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69451]	arabinose ChEBI	-	growth
[Ref.: #69451]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69451]	fructose ChEBI	+/-	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69451]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69451]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69451]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69451]	raffinose ChEBI	-	growth
[Ref.: #69451]	rhamnose ChEBI	+	growth
[Ref.: #69451]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69451]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69451]	3944	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69451]	6128	not determinedn.d.	+	+/-	+/-	-	+	+/-	+/-	+/-	-	+	+	-	+/-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22777]	Sample type/isolated from	soil
[Ref.: #22777]	Geographic location (country and/or sea, region)	Moscow-Yugo, Zapadnaya Southwest Forest Park
[Ref.: #22777]	Country	Russia
[Ref.: #22777]	Country ISO 3 Code	RUS
[Ref.: #22777]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22777]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22777]	Nocardia zapadnayensis strain FMN18 16S ribosomal RNA gene, partial sequence	JN896611	1503	GenBank ENA	1124754 tax ID

[Ref.: #22777]

GC-content

70.3 mol%

fluorimetric

Availability in culture collections External links

[Ref.: #22777]

Culture collection no.

DSM 45872, KCTC 29234

[Ref.: #89964]

SI-ID 401407

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia zapadnayensis sp. nov., isolated from soil.	Ozdemir-Kocak F, Saygin H, Saricaoglu S, Cetin D, Potter G, Sproer C, Guven K, Isik K, Klenk HP, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-015-0612-2	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22777

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45872

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69451

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#89964

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401407.1 )

* These data were automatically processed and therefore are not curated

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