Strain identifier

BacDive ID: 131550

Type strain: Yes

Species: Nocardia zapadnayensis

Strain Designation: FMN18

Strain history: <- F. Ozdemir Kocak, Bilecik Seyh Edebali University, Turkey; FMN18

NCBI tax ID(s): 1124754 (species)

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General

@ref: 22777

BacDive-ID: 131550

DSM-Number: 45872

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardia zapadnayensis FMN18 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1124754
  • Matching level: species

strain history

  • @ref: 22777
  • history: <- F. Ozdemir Kocak, Bilecik Seyh Edebali University, Turkey; FMN18

doi: 10.13145/bacdive131550.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia zapadnayensis
  • full scientific name: Nocardia zapadnayensis Ozdemir-Kocak et al. 2016

@ref: 22777

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia zapadnayensis

full scientific name: Nocardia zapadnayensis Ozdemir-Kocak et al. 2016

strain designation: FMN18

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69451ColourlessISP 3
69451Beige (1001)ISP 2
69451Beige (1001)suter with tyrosine
69451Ivory (1014)ISP 6
69451Ivory (1014)suter without tyrosine
69451Light ivory (1015)ISP 5
69451Light ivory (1015)ISP 7
69451Pastel yellow (1034)ISP 4

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69451noAerial myceliumISP 2
69451noAerial myceliumISP 3
69451noAerial myceliumISP 4
69451noAerial myceliumISP 5
69451noAerial myceliumISP 6
69451noAerial myceliumISP 7
69451noAerial myceliumsuter with tyrosine
69451noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69451noMelanin
69451yessoluble pigmentIvory (1014), beige (1001)

multimedia

@refmultimedia contentcaptionintellectual property rights
69451DSM_45872_image3.jpegPlates (553, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69451DSM_45872_image4.jpegPlates (553, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 22777
  • name: GPHF-MEDIUM (DSMZ Medium 553)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/553
  • composition: Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water

culture temp

  • @ref: 22777
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

halophily

  • @ref: 69451
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6945122599arabinose-growth
6945162968cellulose-growth
6945128757fructose+/-growth
6945117234glucose+growth
6945117268inositol-growth
6945137684mannose-growth
6945116634raffinose-growth
6945126546rhamnose+growth
6945117992sucrose-growth
6945118222xylose-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69451-------------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69451++/-+/--++/-+/-+/--++-+/---+---

Isolation, sampling and environmental information

isolation

  • @ref: 22777
  • sample type: soil
  • geographic location: Moscow-Yugo, Zapadnaya Southwest Forest Park
  • country: Russia
  • origin.country: RUS
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 22777
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22777
  • description: Nocardia zapadnayensis strain FMN18 16S ribosomal RNA gene, partial sequence
  • accession: JN896611
  • length: 1503
  • database: ena
  • NCBI tax ID: 1124754

GC content

  • @ref: 22777
  • GC-content: 70.3
  • method: fluorimetric

External links

@ref: 22777

culture collection no.: DSM 45872, KCTC 29234

straininfo link

  • @ref: 89964
  • straininfo: 401407

literature

  • topic: Phylogeny
  • Pubmed-ID: 26547854
  • title: Nocardia zapadnayensis sp. nov., isolated from soil.
  • authors: Ozdemir-Kocak F, Saygin H, Saricaoglu S, Cetin D, Potter G, Sproer C, Guven K, Isik K, Klenk HP, Sahin N
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0612-2
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Sequence, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/analysis/chemistry, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Nocardia/chemistry/cytology/genetics/*isolation & purification, Nucleic Acid Hybridization, Phospholipids/analysis/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22777Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45872Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45872)
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69451Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2045872.pdf
89964Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401407.1