Paenibacillus faecis (DSM 23593, CIP 101062, 656.84)

Name: Paenibacillus faecis (DSM 23593, CIP 101062, 656.84)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131549

Type strain

Strain Designation 656.84

Culture col. no. DSM 23593 CIP 101062 656.84

NCBI tax ID(s) 862114

Special Collections DSMZ CIP

History DSMZ <- D. Clermont, CIP; 656.84 <- Bordeaux Hospital CIP <- 1984, Lab. Ident. Inst. Pasteur, Paris, France: strain 656.84 <- Bordeaux Hosp., France

Links

Paenibacillus faecis 656.84 is a facultative anaerobe, Gram-positive, motile bacterium that was isolated from human faeces.

Gram-positive motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 67411

DSM 23593,CIP 101062

@ref 20215

Last LPSN update 2026-05-29 08:37:38

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus faecis

Full scientific name Paenibacillus faecis Clermont et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119222	positive	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
41884	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
22776	CASO AGAR (MERCK 105458) (DSMZ Medium 220)	Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled water
119222	CIP Medium 72	Medium recipe at CIP
119222	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
22776	positive	growth	30
41884	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119222	facultative anaerobe
125439	facultative anaerobe	96.18

Spore formation

@ref	Spore formation	Confidence
125438		91.68
125439		92.034

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119222	17632 ChEBI	nitrate	+	reduction
119222	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119222	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119222	amylase	+
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119222	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119222	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
119222	tween esterase	-
119222	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119222	-	-	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
22776	human faeces	Homo sapiens	Bordeaux	France	FRA	Europe
119222	Human, Feces	Homo sapiens	Bordeaux	France	FRA	Europe	1984

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22776	1	Risk group (German classification)
119222	1	Risk group (French classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM808414v1 assembly for Paenibacillus faecis DSM 23593	scaffold	GCA_008084145	862114.3	862114	76.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22776	Paenibacillus faecis strain CIP 101062 16S ribosomal RNA gene, partial sequence	HM212646	1496		862114

GC content

@ref	GC-content (mol%)	Method
22776	52.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM808414v1 assembly for Paenibacillus faecis DSM 23593
NCBI: GCA_008084145

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	96.18	no
125439	gram_stain	BacteriaNetⓘ	variable	69.72	no
125439	spore_formation	BacteriaNetⓘ	yes	92.03	no
125439	motility	BacteriaNetⓘ	yes	82.27	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus faecis DSM 23593
NCBI: GCA_008084145.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	57.85	no
125438	anaerobic	anaerobicⓘ	no	92.17	yes
125438	aerobic	aerobicⓘ	no	63.31	yes
125438	spore-forming	spore-formingⓘ	yes	91.68	no
125438	thermophilic	thermophileⓘ	no	92.64	yes
125438	flagellated	motile2+ⓘ	yes	84.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Nitrogen-Fixing Paenibacillus haidiansis and Paenibacillus sanfengchensis: Two Novel Species from Plant Rhizospheres.	Zhang W, Gao M, Hu R, Shang Y, Liu M, Lan P, Jiao S, Wei G, Chen S.	Microorganisms	10.3390/microorganisms12122561	2024
Phylogeny	Paenibacillus oralis sp. nov., Isolated from Human Subgingival Dental Plaque of Gingivitis Lesion.	Park SN, Lim YK, Shin JH, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01843-0	2019
Phylogeny	Biological Synthesis of Ginsenoside Rd Using Paenibacillus horti sp. nov. Isolated from Vegetable Garden.	Akter S, Huq MA	Curr Microbiol	10.1007/s00284-018-1561-6	2018
Phylogeny	Paenibacillus faecis sp. nov., isolated from human faeces.	Clermont D, Gomard M, Hamon S, Bonne I, Fernandez JC, Wheeler R, Malosse C, Chamot-Rooke J, Gribaldo S, Boneca IG, Bizet C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000622	2015
Phylogeny	Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree.	Li Q, Zuo YZ, Gao M, Chen SF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005216	2022

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22776	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23593
#41884	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68382	Automatically annotated from API zym .
#119222	Collection of Institut Pasteur ; Curators of the CIP; CIP 101062
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus faecis (DSM 23593, CIP 101062, 656.84)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_008084145

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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