Name: Paenibacillus faecis 656.84
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131549

Type strain:

Species: Paenibacillus faecis

Strain Designation: 656.84

Culture col. no.: DSM 23593, CIP 101062

Strain history: CIP <- 1984, Lab. Ident. Inst. Pasteur, Paris, France: strain 656.84 <- Bordeaux Hosp., France

NCBI tax ID(s): 862114 (species)

SI-ID 67411

CIP 101062

Special Collections

DSMZ
CIP

Section

Paenibacillus faecis 656.84 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from human faeces.

Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus faecis**
	Full Scientific Name (LPSN)	Paenibacillus faecis Clermont et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #119222]	Gram stain	positive

[Ref.: #119222]	Cell shape	rod-shaped

[Ref.: #119222]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #41884]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41884]

Culture medium growth

[Ref.: #41884]

Culture medium composition

expand / minimize

[Ref.: #22776]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #22776]

Culture medium growth

[Ref.: #22776]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22776]

Culture medium composition

expand / minimize

[Ref.: #119222]

Culture medium

CIP Medium 72

[Ref.: #119222]

Culture medium growth

[Ref.: #119222]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119222]

Culture medium

CIP Medium 3

[Ref.: #119222]

Culture medium growth

[Ref.: #119222]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #22776]			growth	30 °C
[Ref.: #41884]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119222]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.68
[Ref.: #69481]	Ability of spore formation	yes Confidence in %96

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119222]		nitrate ChEBI	+	reduction
[Ref.: #119222]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119222]		indole ChEBI	yes

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119222]	amylase	+
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119222]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119222]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119222]	tween esterase	-
[Ref.: #119222]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119222]	6671	-	-	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22776]	Sample type/isolated from	human faeces
[Ref.: #22776]	Geographic location (country and/or sea, region)	Bordeaux
[Ref.: #22776]	Country	France
[Ref.: #22776]	Country ISO 3 Code	FRA
[Ref.: #22776]	Continent	Europe

[Ref.: #119222]	Sample type/isolated from	Human, Feces
[Ref.: #119222]	Geographic location (country and/or sea, region)	Bordeaux
[Ref.: #119222]	Country	France
[Ref.: #119222]	Country ISO 3 Code	FRA
[Ref.: #119222]	Continent	Europe
[Ref.: #119222]	Isolation date	1984
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22776]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119222]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22776]	Paenibacillus faecis strain CIP 101062 16S ribosomal RNA gene, partial sequence	HM212646	1496	GenBank ENA	862114 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus faecis DSM 23593	GCA_008084145	scaffold	GenBank ENA	862114 tax ID	*
[Ref.: #66792]	Paenibacillus faecis strain DSM 23593	862114.3	wgs	PATRIC	862114 tax ID	*

[Ref.: #22776]

GC-content

52.9 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus faecis DSM 23593 NCBI: GCA_008084145.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	96	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus faecis DSM 23593 NCBI: GCA_008084145.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	57.846	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.174	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	63.312	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.68	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	92.642	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.196	no

Availability in culture collections External links

[Ref.: #22776]

Culture collection no.

DSM 23593, CIP 101062

[Ref.: #89963]

SI-ID 67411

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus oralis sp. nov., Isolated from Human Subgingival Dental Plaque of Gingivitis Lesion.	Park SN, Lim YK, Shin JH, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JK	Curr Microbiol	10.1007/s00284-019-01843-0	2019	*
Phylogeny	Biological Synthesis of Ginsenoside Rd Using Paenibacillus horti sp. nov. Isolated from Vegetable Garden.	Akter S, Huq MA	Curr Microbiol	10.1007/s00284-018-1561-6	2018	*
Phylogeny	Paenibacillus faecis sp. nov., isolated from human faeces.	Clermont D, Gomard M, Hamon S, Bonne I, Fernandez JC, Wheeler R, Malosse C, Chamot-Rooke J, Gribaldo S, Boneca IG, Bizet C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000622	2015	*
Phylogeny	Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree.	Li Q, Zuo YZ, Gao M, Chen SF	Int J Syst Evol Microbiol	10.1099/ijsem.0.005216	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22776

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23593

#41884 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89963

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID67411.1 )

#119222 Collection of Institut Pasteur ; Curators of the CIP; CIP 101062
* These data were automatically processed and therefore are not curated

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Paenibacillus faecis DSM 23593

Paenibacillus faecis DSM 23593

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