Strain identifier

BacDive ID: 131549

Type strain: Yes

Species: Paenibacillus faecis

Strain Designation: 656.84

Strain history: CIP <- 1984, Lab. Ident. Inst. Pasteur, Paris, France: strain 656.84 <- Bordeaux Hosp., France

NCBI tax ID(s): 862114 (species)

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General

@ref: 22776

BacDive-ID: 131549

DSM-Number: 23593

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, Gram-positive, motile, rod-shaped

description: Paenibacillus faecis 656.84 is a facultative anaerobe, spore-forming, Gram-positive bacterium that was isolated from human faeces.

NCBI tax id

  • NCBI tax id: 862114
  • Matching level: species

strain history

@refhistory
22776<- D. Clermont, CIP; 656.84 <- Bordeaux Hospital
119222CIP <- 1984, Lab. Ident. Inst. Pasteur, Paris, France: strain 656.84 <- Bordeaux Hosp., France

doi: 10.13145/bacdive131549.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus faecis
  • full scientific name: Paenibacillus faecis Clermont et al. 2015

@ref: 22776

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus faecis

full scientific name: Paenibacillus faecis Clermont et al. 2015

strain designation: 656.84

type strain: yes

Morphology

cell morphology

  • @ref: 119222
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
41884MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
22776CASO AGAR (MERCK 105458) (DSMZ Medium 220)yesName: CASO AGAR (Merck 105458) (DSMZ Medium 220; with strain-specific modifications) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l MnSO4 0.01 g/l Distilled waterhttps://mediadive.dsmz.de/medium/220
119222CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119222CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
41884positivegrowth30
22776positivegrowth30

Physiology and metabolism

oxygen tolerance

  • @ref: 119222
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69480yes91.68
69481yes96

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11922217632nitrate+reduction
11922216301nitrite-reduction

metabolite production

  • @ref: 119222
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
119222oxidase+
119222amylase+
119222catalase+1.11.1.6
119222tween esterase-
119222urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119222--++-+----++++-++---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
22776human faecesBordeauxFranceFRAEurope
119222Human, FecesBordeauxFranceFRAEurope1984

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
227761Risk group (German classification)
1192221Risk group (French classification)

Sequence information

16S sequences

  • @ref: 22776
  • description: Paenibacillus faecis strain CIP 101062 16S ribosomal RNA gene, partial sequence
  • accession: HM212646
  • length: 1496
  • database: nuccore
  • NCBI tax ID: 862114

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paenibacillus faecis DSM 23593GCA_008084145scaffoldncbi862114
66792Paenibacillus faecis strain DSM 23593862114.3wgspatric862114

GC content

  • @ref: 22776
  • GC-content: 52.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes96no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes57.846no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no92.174yes
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no63.312yes
69480spore-formingspore-formingAbility to form endo- or exosporesyes91.68no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno92.642yes
69480flagellatedmotile2+Ability to perform flagellated movementyes84.196no

External links

@ref: 22776

culture collection no.: DSM 23593, CIP 101062

straininfo link

  • @ref: 89963
  • straininfo: 67411

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26394885Paenibacillus faecis sp. nov., isolated from human faeces.Clermont D, Gomard M, Hamon S, Bonne I, Fernandez JC, Wheeler R, Malosse C, Chamot-Rooke J, Gribaldo S, Boneca IG, Bizet CInt J Syst Evol Microbiol10.1099/ijsem.0.0006222015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Feces/*microbiology, France, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryPathogenicity
Phylogeny30167766Biological Synthesis of Ginsenoside Rd Using Paenibacillus horti sp. nov. Isolated from Vegetable Garden.Akter S, Huq MACurr Microbiol10.1007/s00284-018-1561-62018Bacterial Typing Techniques/methods, Base Composition/genetics, DNA, Bacterial/genetics, Fatty Acids/genetics, Gardens, Ginsenosides/*biosynthesis/*genetics, Nucleic Acid Hybridization/genetics, Paenibacillus/*genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA/methods, Soil Microbiology, Vegetables/*microbiologyTranscriptome
Phylogeny31832844Paenibacillus oralis sp. nov., Isolated from Human Subgingival Dental Plaque of Gingivitis Lesion.Park SN, Lim YK, Shin JH, Jo E, Chang YH, Shin Y, Paek J, Kim H, Kook JKCurr Microbiol10.1007/s00284-019-01843-02019Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Dental Plaque/*microbiology, Fatty Acids/chemistry, Genome, Bacterial, Gingivitis/*microbiology, Glycolipids/chemistry, Humans, Paenibacillus/*classification/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny35100103Paenibacillus caui sp. nov., a nitrogen-fixing species isolated from the rhizosphere soil of a peach tree.Li Q, Zuo YZ, Gao M, Chen SFInt J Syst Evol Microbiol10.1099/ijsem.0.0052162022Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nitrogen/metabolism, *Nitrogen Fixation, *Paenibacillus/classification/isolation & purification, Phospholipids/chemistry, *Phylogeny, *Prunus persica/microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22776Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-23593Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23593)
41884Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/12595
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
89963Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID67411.1
119222Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20101062Collection of Institut Pasteur (CIP 101062)