Name: Modestobacter muralis MDVD1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131489

Type strain:

Species: Modestobacter muralis

Strain Designation: MDVD1

Culture col. no.: DSM 100205, CECT 8845, JCM 31704

Strain history: CECT 8845 <-- M. E. Trujillo, Univ. Salamanca, Spain; MDVD1.

NCBI tax ID(s): 1608614 (species)

SI-ID 404142

DSM 100205

Special Collections

DSMZ
JCM

Section

Modestobacter muralis MDVD1 is a spore-forming bacterium that was isolated from deteriorated sandstone from the surface of a historical building.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Geodermatophilales*
	Family	*Geodermatophilaceae*
	Genus	*Modestobacter*
	Species	**Modestobacter muralis**
	Full Scientific Name (LPSN)	Modestobacter muralis Trujillo et al. 2015

Information on morphological and physiological properties Morphology

Multimedia content

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Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GEO-MEDIUM (DSMZ Medium 714)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22716]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %97

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Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22716]	Sample type/isolated from	deteriorated sandstone from the surface of a historical building
[Ref.: #22716]	Geographic location (country and/or sea, region)	Salamanca (40° 57' 45'' N; 5° 45' 00'' W)
[Ref.: #22716]	Country	Spain
[Ref.: #22716]	Country ISO 3 Code	ESP
[Ref.: #22716]	Continent	Europe
[Ref.: #22716]	Geographic location	40.9625°/-5.7500°

[Ref.: #67770]	Sample type/isolated from	Deteriorated sandstone scraped from the surface of a historic building
[Ref.: #67770]	Geographic location (country and/or sea, region)	Salamanca
[Ref.: #67770]	Country	Spain
[Ref.: #67770]	Country ISO 3 Code	ESP
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Environmental	#Terrestrial	#Geologic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22716]	Modestobacter sp. MDVD1 partial 16S rRNA gene, strain MDVD1	LN810545	1459	GenBank ENA	1608614 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Modestobacter muralis DSM 100205	GCA_010686625	contig	GenBank ENA	1608614 tax ID
[Ref.: #67770]	Modestobacter muralis DSM 100205	GCA_010682105	contig	GenBank ENA	1608614 tax ID
[Ref.: #66792]	Modestobacter muralis strain DSM 100205	1608614.3	wgs	PATRIC	1608614 tax ID	*
[Ref.: #66792]	Modestobacter muralis strain DSM 100205	1608614.4	wgs	PATRIC	1608614 tax ID	*

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GC-content

71.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Modestobacter muralis strain DSM 100205 PATRIC: 1608614.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	97	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Modestobacter muralis strain DSM 100205 PATRIC: 1608614.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.197	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.937	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	63.223	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.222	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	63	no

Availability in culture collections External links

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Culture collection no.

DSM 100205, CECT 8845, JCM 31704

[Ref.: #89906]

SI-ID 404142

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Modestobacter lapidis sp. nov. and Modestobacter muralis sp. nov., isolated from a deteriorated sandstone historic building in Salamanca, Spain.	Trujillo ME, Goodfellow M, Busarakam K, Riesco R	Antonie Van Leeuwenhoek	10.1007/s10482-015-0482-7	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22716

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100205

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89906

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404142.1 )

* These data were automatically processed and therefore are not curated

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Modestobacter muralis strain DSM 100205

Modestobacter muralis strain DSM 100205

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