Modestobacter lapidis (DSM 100206, CECT 8844, MON 3.1)

Name: Modestobacter lapidis (DSM 100206, CECT 8844, MON 3.1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131488

Type strain

Culture col. no. DSM 100206 CECT 8844 MON 3.1 JCM 31703

NCBI tax ID(s) 1608613

Special Collections DSMZ JCM

History <- M. E. Trujillo, Universidad de Salamanca, Spain; MON3.1 CECT 8844 <-- M. E. Trujillo, Univ. Salamanca, Spain; MON 3.1.

Links

Modestobacter lapidis DSM 100206 is a bacterium that was isolated from deteriorated sandstone from the surface of a historical building.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405687

CECT 8844,DSM 100206

@ref 20215

Last LPSN update 2026-02-09 11:31:28

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Geodermatophilales

Family Geodermatophilaceae

Genus Modestobacter

Species Modestobacter lapidis

Full scientific name Modestobacter lapidis Trujillo et al. 2015

Morphology

Multimedia

@ref:	22715
multimedia content:	DSM_100206.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100206.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
22715	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
22715	GPHF-MEDIUM (DSMZ Medium 553)	Medium recipe at MediaDive	Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
22715	GEO-MEDIUM (DSMZ Medium 714)	Medium recipe at MediaDive	Name: GEO-MEDIUM (DSMZ Medium 714) Composition: Agar 15.0 g/l CaCO3 1.0 g/l Starch 1.0 g/l Glucose 1.0 g/l Yeast extract 1.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22715	positive	growth	28
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.803

Spore formation

@ref	Spore formation	Confidence
125439		94

Observation

67770

Observationquinones: MK-9(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	-
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22715	deteriorated sandstone from the surface of a historical building	Salamanca (40° 57' 45'' N; 5° 45' 00'' W)	Spain	ESP	Europe	40.9625	-5.75 40.9625/-5.75
67770	Deteriorated sandstone scraped from the surface of a historic building	Salamanca	Spain	ESP	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22715	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID
66792	ASM1977990v1 assembly for Modestobacter lapidis DSM 100206	contig	GCA_019779905	1608613.10	1608613
66792	Modestobacter lapidis strain DSM 100206	contig		1608613.6	1608613

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22715	Modestobacter sp. MON3.1 partial 16S rRNA gene, strain MON3.1	LN810544	1452		1608613

GC content

@ref	GC-content (mol%)	Method
22715	72	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Modestobacter lapidis DSM 100206
NCBI: GCA_019779905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.00	no
125439	motility	BacteriaNetⓘ	yes	62.90	no
125439	gram_stain	BacteriaNetⓘ	negative	76.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	86.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Modestobacter lapidis strain DSM 100206
PATRIC: 1608613.6

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.28	no
125438	anaerobic	anaerobicⓘ	no	97.78	no
125438	spore-forming	spore-formingⓘ	yes	54.79	no
125438	aerobic	aerobicⓘ	yes	90.80	no
125438	thermophilic	thermophileⓘ	no	96.84	yes
125438	flagellated	motile2+ⓘ	no	63.33	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Properties of Modestobacter deserti sp. nov., a Kind of Novel Phosphate-Solubilizing Actinobacteria Inhabited in the Desert Biological Soil Crusts.	Jiang ZM, Zhang BH, Sun HM, Zhang T, Yu LY, Zhang YQ.	Front Microbiol	10.3389/fmicb.2021.742798	2021
Phylogeny	Modestobacter lapidis sp. nov. and Modestobacter muralis sp. nov., isolated from a deteriorated sandstone historic building in Salamanca, Spain.	Trujillo ME, Goodfellow M, Busarakam K, Riesco R	Antonie Van Leeuwenhoek	10.1007/s10482-015-0482-7	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22715	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100206
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Modestobacter lapidis (DSM 100206, CECT 8844, MON 3.1)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_019779905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media