Streptomyces lushanensis (DSM 42121, JCM 19682, KACC 17834)

Name: Streptomyces lushanensis (DSM 42121, JCM 19682, KACC 17834)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131435

Type strain

Culture col. no. DSM 42121 JCM 19682 KACC 17834 KCTC 29261 JXJ 0135 2 more

NCBI tax ID(s) 1434255

Special Collections DSMZ JCM KCTC Wink compendium

History <- W.-J. Li, YIM; JXJ 0135 <- B.-H. Zhang W.-J. Li JXJ 0135.

Links

Streptomyces lushanensis DSM 42121 is a mesophilic prokaryote that builds an aerial mycelium and was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 394571

JCM 19628

@ref 20215

Last LPSN update 2026-02-09 11:31:27

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces lushanensis

Full scientific name Streptomyces lushanensis Zhang et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence
125438		90.167

Colony morphology

@ref	Colony color	Medium used
69347	Beige (1001), Olive brown (8008)	ISP 5
69347	Beige (1001), Grey beige (1019)	ISP 2
69347	Beige (1001), Grey beige (1019)	suter without tyrosine
69347	Beige (1001), Fawn brown (8007)	ISP 7
69347	Beige (1001)	ISP 6
69347	Sand yellow (1002), Fawn brown (8007)	ISP 3
69347	Sand yellow (1002), Light ivory (1015)	suter with tyrosine

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69347	Aerial mycelium	Signal white (9003)	ISP 2
69347	Aerial mycelium	Traffic white (9016), yellow grey (7034), pebble grey (7032)	ISP 3
69347	Aerial mycelium	Beige (1001), fawn brown (8007)	ISP 4
69347	Aerial mycelium	Traffic white (9016), yellow grey (7034)	ISP 5
69347	Aerial mycelium		ISP 6
69347	Aerial mycelium	Grey white (9002), yellow grey (7034)	ISP 7
69347	Aerial mycelium	Cream (9001)	suter with tyrosine
69347	Aerial mycelium	Cream (9001)	suter without tyrosine

Pigmentation

@ref	Production	Color	Name
69347			melanin pigment
69347		Daffodil yellow (1004), brown beige (1011), pebble grey (7032), yellow grey (7034), traffic white (9016), ivory (1014), sand yellow (1002)	soluble pigment

Multimedia

@ref:	22662
multimedia content:	DSM_42121.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42121.jpg
caption:	Medium 84 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69347
multimedia content:	DSM_42121_image3.jpeg
multimedia.multimedia content:	DSM_42121_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69347
multimedia content:	DSM_42121_image4.jpeg
multimedia.multimedia content:	DSM_42121_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
22662	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
22662	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
22662	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
22662	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	91.998

Spore formation

@ref	Spore formation	Confidence
125438		91.644

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69347	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: MK-9(H₆), MK-9(H₈)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69347	22599 ChEBI	arabinose	-	growth
69347	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
69347	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69347	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69347	17268 ChEBI	inositol	-	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69347	37684 ChEBI	mannose	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69347	16634 ChEBI	raffinose	-	growth
69347	26546 ChEBI	rhamnose	-	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69347	17992 ChEBI	sucrose	-	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69347	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	+	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API Coryne
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	+	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69347	-	-	+	+	-	-	+	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69347	not determinedn.d.	+	+/-	+/-	+/-	+	+/-	+/-	+	+/-	+	+/-	-	-	-	+	+	+	+	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22662	soil	Lushan Mountain, Jiangxi Province (29°42' N, 116°26' E)	China	CHN	Asia	29.7	116.433 29.7/116.433
67770	Soil in Lushan Mountain		China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22662	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID
67770	ASM170051v1 assembly for Streptomyces lushanensis NRRL B-24994	scaffold	GCA_001700515	2791355415	1434255

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22662	Streptomyces lushanensis strain JXJ 0135 16S ribosomal RNA gene, partial sequence	KF938656	1516		1434255

GC content

@ref	GC-content (mol%)	Method
22662	69.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces lushanensis NRRL B-24994
NCBI: GCA_001700515.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.13	no
125438	anaerobic	anaerobicⓘ	no	95.87	no
125438	aerobic	aerobicⓘ	yes	92.00	no
125438	spore-forming	spore-formingⓘ	yes	91.64	no
125438	thermophilic	thermophileⓘ	no	93.90	yes
125438	flagellated	motile2+ⓘ	no	90.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Biocontrol Potential of Streptomyces odonnellii SZF-179 toward Alternaria alternata to Control Pear Black Spot Disease.	Zhang F, Wen S, Wang B, Zhang Z, Liu F, Ye T, Wang K, Hu H, Yang X, Fang W.	Int J Mol Sci	10.3390/ijms242417515	2023
Phylogeny	Streptomyces paludis sp. nov., isolated from an alpine wetland soil.	Zhao J, Tang X, Li K, Guo Y, Feng M, Gao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003821	2020
Phylogeny	Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii).	Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro A	Antonie Van Leeuwenhoek	10.1007/s10482-019-01261-z	2019
Phylogeny	Streptomyces lushanensis sp. nov., a novel actinomycete with anti-cyanobacterial activity.	Zhang BH, Cheng J, Chen W, Li HQ, Yang JY, Park DJ, Kim CJ, Shen R, Duan YQ, Li WJ	J Antibiot (Tokyo)	10.1038/ja.2014.85	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22662	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42121
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69347	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces lushanensis (DSM 42121, JCM 19682, KACC 17834)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001700515

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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