Name: Streptomyces lushanensis DSM 42121
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131435

Type strain:

Species: Streptomyces lushanensis

Culture col. no.: DSM 42121, JCM 19682, KACC 17834, KCTC 29261, JXJ 0135, JCM 19628, NRRL B-24994

Strain history: W.-J. Li JXJ 0135.

NCBI tax ID(s): 1434255 (species)

SI-ID 396666

DSM 42121

Special Collections

Section

Streptomyces lushanensis DSM 42121 is a spore-forming bacterium that builds an aerial mycelium and was isolated from soil.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces lushanensis**
	Full Scientific Name (LPSN)	Streptomyces lushanensis Zhang et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %90.167

[Ref.: #69347]	Colony color	Beige (1001), Olive brown (8008)
[Ref.: #69347]	Cultivation medium used	ISP 5

[Ref.: #69347]	Colony color	Beige (1001), Grey beige (1019)
[Ref.: #69347]	Cultivation medium used	ISP 2

[Ref.: #69347]	Colony color	Beige (1001), Grey beige (1019)
[Ref.: #69347]	Cultivation medium used	suter without tyrosine

[Ref.: #69347]	Colony color	Beige (1001), Fawn brown (8007)
[Ref.: #69347]	Cultivation medium used	ISP 7

[Ref.: #69347]	Colony color	Beige (1001)
[Ref.: #69347]	Cultivation medium used	ISP 6

[Ref.: #69347]	Colony color	Sand yellow (1002), Fawn brown (8007)
[Ref.: #69347]	Cultivation medium used	ISP 3

[Ref.: #69347]	Colony color	Sand yellow (1002), Light ivory (1015)
[Ref.: #69347]	Cultivation medium used	suter with tyrosine

[Ref.: #69347]	Pigment production	no
[Ref.: #69347]	Pigment name	Melanin
[Ref.: #69347]	Pigment production	yes
[Ref.: #69347]	Pigmentation color	Daffodil yellow (1004), brown beige (1011), pebble grey (7032), yellow grey (7034), traffic white (9016), ivory (1014), sand yellow (1002)
[Ref.: #69347]	Pigment name	soluble pigment

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Signal white (9003)
[Ref.: #69347]	Medium Name (multicellularity)	ISP 2

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Traffic white (9016), yellow grey (7034), pebble grey (7032)
[Ref.: #69347]	Medium Name (multicellularity)	ISP 3

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Beige (1001), fawn brown (8007)
[Ref.: #69347]	Medium Name (multicellularity)	ISP 4

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Traffic white (9016), yellow grey (7034)
[Ref.: #69347]	Medium Name (multicellularity)	ISP 5

[Ref.: #69347]	Multicellular complex forming ability	no
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Medium Name (multicellularity)	ISP 6

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Grey white (9002), yellow grey (7034)
[Ref.: #69347]	Medium Name (multicellularity)	ISP 7

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Cream (9001)
[Ref.: #69347]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69347]	Multicellular complex forming ability	yes
[Ref.: #69347]	Multicellular complex name	Aerial mycelium
[Ref.: #69347]	Multicellular complex color	Cream (9001)
[Ref.: #69347]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

[Ref.: #22662]

Caption:

Medium 84 28°C

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Intellectual property rights:

[Ref.: #69347]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

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Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69347]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69347]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #22662]

Culture medium composition

expand / minimize

[Ref.: #22662]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #22662]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22662]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.998

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.644
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69347]		NaCl		growth	0-10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69347]	arabinose ChEBI	-	growth
[Ref.: #69347]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69347]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69347]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69347]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69347]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69347]	raffinose ChEBI	-	growth
[Ref.: #69347]	rhamnose ChEBI	-	growth
[Ref.: #69347]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69347]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69347]	3840	-	-	+	+	-	-	+	+	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69347]	6024	not determinedn.d.	+	+/-	+/-	+/-	+	+/-	+/-	+	+/-	+	+/-	-	-	-	+	+	+	+	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22662]	Sample type/isolated from	soil
[Ref.: #22662]	Geographic location (country and/or sea, region)	Lushan Mountain, Jiangxi Province (29°42' N, 116°26' E)
[Ref.: #22662]	Country	China
[Ref.: #22662]	Country ISO 3 Code	CHN
[Ref.: #22662]	Continent	Asia
[Ref.: #22662]	Geographic location	29.7000°/116.4330°

[Ref.: #67770]	Sample type/isolated from	Soil in Lushan Mountain
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22662]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22662]	Streptomyces lushanensis strain JXJ 0135 16S ribosomal RNA gene, partial sequence	KF938656	1516	GenBank ENA	1434255 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces lushanensis NRRL B-24994	GCA_001700515	scaffold	GenBank ENA	1434255 tax ID

[Ref.: #22662]

GC-content

69.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces lushanensis NRRL B-24994 NCBI: GCA_001700515.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces lushanensis NRRL B-24994 NCBI: GCA_001700515.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.127	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.869	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.998	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.644	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.9	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.167	no

Availability in culture collections External links

[Ref.: #22662]

Culture collection no.

DSM 42121, JCM 19682, KACC 17834, KCTC 29261, JXJ 0135, JCM 19628, NRRL B-24994

[Ref.: #89861]

SI-ID 396666

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces paludis sp. nov., isolated from an alpine wetland soil.	Zhao J, Tang X, Li K, Guo Y, Feng M, Gao J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003821	2020	*
Phylogeny	Streptomyces corynorhini sp. nov., isolated from Townsend's big-eared bats (Corynorhinus townsendii).	Hamm PS, Caimi NA, Northup DE, Valdez EW, Buecher DC, Dunlap CA, Labeda DP, Porras-Alfaro A	Antonie Van Leeuwenhoek	10.1007/s10482-019-01261-z	2019	*
Phylogeny	Streptomyces lushanensis sp. nov., a novel actinomycete with anti-cyanobacterial activity.	Zhang BH, Cheng J, Chen W, Li HQ, Yang JY, Park DJ, Kim CJ, Shen R, Duan YQ, Li WJ	J Antibiot (Tokyo)	10.1038/ja.2014.85	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22662

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42121

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69347

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89861

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396666.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces lushanensis NRRL B-24994

Streptomyces lushanensis NRRL B-24994

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