Vibrio panuliri (DSM 27724, JCM 19500, LMG 27902)

Name: Vibrio panuliri (DSM 27724, JCM 19500, LMG 27902)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131434

Type strain

Strain Designation LBS2

Culture col. no. DSM 27724 JCM 19500 LMG 27902 LBS2

NCBI tax ID(s) 1381081

Special Collections DSMZ JCM

History <- S. Das, Inst. Life Sci., Bhubaneswar, India; LBS2 S. K. Das LBS2.

Links

Vibrio panuliri LBS2 is a mesophilic prokaryote that was isolated from eggs carried on pleopods of the spiny lobster Panulirus penicillatus.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 272480

LMG 27902,JCM 19500

@ref 20215

Last LPSN update 2026-02-09 11:31:27

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order "Vibrionales"

Family Vibrionaceae

Genus Vibrio

Species Vibrio panuliri

Full scientific name Vibrio panuliri Kumari et al. 2015

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	98.7
125438	negative	100

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	94.5

Spore formation

@ref	Spore formation	Confidence
125439		98.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Crustacea
#Host Body-Site	#Other	#Abdomen
#Host Body Product	#Urogenital tract	#Egg

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
22661	eggs carried on pleopods of the spiny lobster Panulirus penicillatus	Panulirus penicillatus	Andaman Sea	India	IND	Asia	12.2333	93.1667 12.2333/93.1667
67770	Spiny lobster Panulirus penicillatus collected at a depth of 3.5 m in Andaman Sea	Panulirus penicillatus

Taxonmaps

69479

Global distribution of 16S sequence KF487035 (>99% sequence identity) for Vibrio from Microbeatlas

Aquatic Samples	733
Soil Samples	42
Animal Samples	407
Plant Samples	80
Total Samples	1262

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM993820v1 assembly for Vibrio panuliri JCM 19500	complete	GCA_009938205	1381081.15	2896912464	1381081	98.79

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22661	Vibrio panuliri strain LBS2 16S ribosomal RNA gene, partial sequence	KF487035	1422		1381081

GC content

22661

GC-content (mol%)45.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Vibrio panuliri JCM 19500
NCBI: GCA_009938205

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.50	no
125439	motility	BacteriaNetⓘ	yes	77.50	no
125439	gram_stain	BacteriaNetⓘ	negative	98.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Vibrio panuliri JCM 19500
NCBI: GCA_009938205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.59	no
125438	aerobic	aerobicⓘ	no	67.60	no
125438	spore-forming	spore-formingⓘ	no	89.04	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	yes	87.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Vibrio taketomensis sp. nov. by genome taxonomy.	Tanaka M, Hongyu B, Jiang C, Mino S, Milet Meirelles P, Thompson F, Gomez-Gil B, Sawabe T	Syst Appl Microbiol	10.1016/j.syapm.2019.126048	2019
Phylogeny	Vibrio panuliri sp. nov., a marine bacterium isolated from spiny lobster, Panulirus penicillatus and transfer of Vibrio ponticus from Scophthalmi clade to the newly proposed Ponticus clade.	Kumari P, Poddar A, Schumann P, Das SK	Res Microbiol	10.1016/j.resmic.2014.10.012	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22661	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27724
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Vibrio panuliri (DSM 27724, JCM 19500, LMG 27902)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_009938205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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