Name: Paenibacillus wulumuqiensis Y24
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131433

Type strain:

Species: Paenibacillus wulumuqiensis

Strain Designation: Y24

Culture col. no.: DSM 29194, CPCC 100602, JCM 30284

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; Y24.

NCBI tax ID(s): 1567107 (species)

SI-ID 401720

DSM 29194

Special Collections

DSMZ
JCM

Section

Paenibacillus wulumuqiensis Y24 is a spore-forming bacterium that was isolated from cold spring water.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus wulumuqiensis**
	Full Scientific Name (LPSN)	Paenibacillus wulumuqiensis Zhu et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22660]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22660]

Culture medium growth

[Ref.: #22660]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22660]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22660]			growth	30 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %95

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22660]	Sample type/isolated from	cold spring water
[Ref.: #22660]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region, Urumchi (E 85°22'35'', N 43°50'30'')
[Ref.: #22660]	Country	China
[Ref.: #22660]	Country ISO 3 Code	CHN
[Ref.: #22660]	Continent	Asia
[Ref.: #22660]	Geographic location	43.8417°/85.3764°

[Ref.: #67770]	Sample type/isolated from	Cold spring in Urumchi
[Ref.: #67770]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Spring
#Condition	#Psychrophilic (<10°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22660]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22660]	Paenibacillus wulumuqiensis strain Y24 16S ribosomal RNA gene, partial sequence	KM243343	1523	GenBank ENA	1567107 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus wulumuqiensis Y24	GCA_000971965	scaffold	GenBank ENA	1567107 tax ID
[Ref.: #66792]	Paenibacillus wulumuqiensis Y24	2645728074	draft	JGI IMG/M	1567107 tax ID	*

[Ref.: #22660]

GC-content

48.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus wulumuqiensis Y24 NCBI: GCA_000971965.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	95	no

Availability in culture collections External links

[Ref.: #22660]

Culture collection no.

DSM 29194, CPCC 100602, JCM 30284

[Ref.: #89860]

SI-ID 401720

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus.	Zhu J, Wang W, Li SH, Song SQ, Xie YQ, Tang QY, Osman G, Shi YH, Zhang ZD, Li WJ	Arch Microbiol	10.1007/s00203-014-1077-9	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22660

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29194

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89860

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401720.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paenibacillus wulumuqiensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF