Paenibacillus shenyangensis (DSM 29192, CPCC 100608, JCM 30283)

Name: Paenibacillus shenyangensis (DSM 29192, CPCC 100608, JCM 30283)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 131432

Type strain

Strain Designation H9

Culture col. no. DSM 29192 CPCC 100608 JCM 30283 H9

NCBI tax ID(s) 1567106

Special Collections DSMZ JCM

History <- W.-J. Li, YIM; H9 <- Z. D. Zhang, Xinjiang Acd. Agri. Sci., China W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; H9.

Links

Paenibacillus shenyangensis H9 is a bacterium that was isolated from surface sterilized carrot, Daucus carota.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 287652

JCM 30283

@ref 20215

Last LPSN update 2026-02-09 11:31:27

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species Paenibacillus shenyangensis

Full scientific name Paenibacillus shenyangensis Jiang et al. 2015

Synonyms (1)

Paenibacillus dauci

BacDive ID	Other strains from **Paenibacillus shenyangensis** (1)	Type strain
162477	P. shenyangensis JCM 19307, CGMCC 2040 (type strain)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
22659	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
22659	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
22659	surface sterilized carrot, Daucus carota	Daucus carota	Xinjiang Uyghur Autonomous Region	China	CHN	Asia
67770	Surface-sterilized carrot (Daucus carota L.) from Xinjiang Uyghur Autonomous Region	Daucus carota		China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KM243342 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	147
Soil Samples	60
Animal Samples	655
Plant Samples	70
Total Samples	932

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
22659	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM97198v1 assembly for Paenibacillus dauci H9	scaffold	GCA_000971985	2627853706	1567106	68.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
22659	Paenibacillus dauci strain H9 16S ribosomal RNA gene, partial sequence	KM243342	1518		1567106

GC content

@ref	GC-content (mol%)	Method
22659	46.6	high performance liquid chromatography (HPLC)
67770	46.5	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus dauci H9
NCBI: GCA_000971985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.71	no
125438	anaerobic	anaerobicⓘ	no	93.18	no
125438	aerobic	aerobicⓘ	no	52.62	no
125438	spore-forming	spore-formingⓘ	yes	85.59	no
125438	thermophilic	thermophileⓘ	no	96.45	yes
125438	flagellated	motile2+ⓘ	yes	84.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus.	Zhu J, Wang W, Li SH, Song SQ, Xie YQ, Tang QY, Osman G, Shi YH, Zhang ZD, Li WJ	Arch Microbiol	10.1007/s00203-014-1077-9	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22659	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29192
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paenibacillus shenyangensis (DSM 29192, CPCC 100608, JCM 30283)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000971985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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