Name: Paenibacillus shenyangensis H9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131432

Type strain:

Species: Paenibacillus shenyangensis

Strain Designation: H9

Culture col. no.: DSM 29192, CPCC 100608, JCM 30283

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; H9.

NCBI tax ID(s): 1567106 (species)

SI-ID 402581

DSM 29192

Special Collections

DSMZ
JCM

Other strains from Paenibacillus shenyangensis

Section

Paenibacillus shenyangensis H9 is a spore-forming bacterium that was isolated from surface sterilized carrot, Daucus carota.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus shenyangensis**
	Full Scientific Name (LPSN)	Paenibacillus shenyangensis Jiang et al. 2015

Synonym

Paenibacillus dauci

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22659]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #22659]

Culture medium growth

[Ref.: #22659]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22659]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22659]			growth	30 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %99

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22659]	Sample type/isolated from	surface sterilized carrot, Daucus carota
[Ref.: #22659]	Host species	Daucus carota
[Ref.: #22659]	Geographic location (country and/or sea, region)	Xinjiang Uyghur Autonomous Region
[Ref.: #22659]	Country	China
[Ref.: #22659]	Country ISO 3 Code	CHN
[Ref.: #22659]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized carrot (Daucus carota L.) from Xinjiang Uyghur Autonomous Region
[Ref.: #67770]	Host species	Daucus carota
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KM243342 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	147
Soil Samples	60
Animal Samples	655
Plant Samples	70
Total Samples	932

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22659]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22659]	Paenibacillus dauci strain H9 16S ribosomal RNA gene, partial sequence	KM243342	1518	GenBank ENA	1567106 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Paenibacillus dauci H9	GCA_000971985	scaffold	GenBank ENA	1567106 tax ID

[Ref.: #22659]	GC-content	46.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	46.5 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus dauci H9 NCBI: GCA_000971985.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus dauci H9 NCBI: GCA_000971985.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	66.71	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.176	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	52.618	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	85.589	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.445	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.366	no

Availability in culture collections External links

[Ref.: #22659]

Culture collection no.

DSM 29192, CPCC 100608, JCM 30283

[Ref.: #89859]

SI-ID 402581

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus wulumuqiensis sp. nov. and Paenibacillus dauci sp. nov., two novel species of the genus Paenibacillus.	Zhu J, Wang W, Li SH, Song SQ, Xie YQ, Tang QY, Osman G, Shi YH, Zhang ZD, Li WJ	Arch Microbiol	10.1007/s00203-014-1077-9	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22659

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29192

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#89859

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402581.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Paenibacillus shenyangensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Paenibacillus dauci H9

Paenibacillus dauci H9

Change proposal

Change proposal