Name: Sinomonas mesophila DSM 28729
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 131431

Type strain:

Species: Sinomonas mesophila

Culture col. no.: DSM 28729, JCM 30094, NCIM 5552, MPKL 26

Strain history: W.-J. Li MPKL 26.

NCBI tax ID(s): 1531955 (species)

Special Collections

DSMZ
JCM

Section

Sinomonas mesophila DSM 28729 is a Gram-positive bacterium that was isolated from soil.

Gram-positive
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Sinomonas*
	Species	**Sinomonas mesophila**
	Full Scientific Name (LPSN)	Sinomonas mesophila Prabhu et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %92.437

[Ref.: #69480]	Motility	no Confidence in %90.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-9(H₂)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22658]	Sample type/isolated from	soil
[Ref.: #22658]	Geographic location (country and/or sea, region)	Karnataka, Bidar Fort (17°55'19''N 77°31'24''E)
[Ref.: #22658]	Country	India
[Ref.: #22658]	Country ISO 3 Code	IND
[Ref.: #22658]	Continent	Asia
[Ref.: #22658]	Geographic location	17.9219°/77.5233°

[Ref.: #67770]	Sample type/isolated from	Soil of Bidar fort
[Ref.: #67770]	Geographic location (country and/or sea, region)	Karnataka
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KJ809567 (>99% sequence identity) for Sinomonas from Microbeatlas

Aquatic Samples	12
Soil Samples	90
Animal Samples	97
Plant Samples	1
Total Samples	200

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22658]	Sinomonas mesophila strain MPKL 26 16S ribosomal RNA gene, partial sequence	KJ809567	1528	GenBank ENA	1531955 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sinomonas mesophila MPKL 26	GCA_001999765	scaffold	GenBank ENA	1531955 tax ID

[Ref.: #22658]	GC-content	68.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	71.1 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sinomonas mesophila MPKL 26 NCBI: GCA_001999765.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	89	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sinomonas mesophila MPKL 26 NCBI: GCA_001999765.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	92.437	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.067	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.932	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	64.203	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.467	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #22658]

Culture collection no.

DSM 28729, JCM 30094, NCIM 5552, MPKL 26

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Sunlight mediated synthesis of silver nanoparticles by a novel actinobacterium (Sinomonas mesophila MPKL 26) and its antimicrobial activity against multi drug resistant Staphylococcus aureus.	Manikprabhu D, Cheng J, Chen W, Sunkara AK, Mane SB, Kumar R, das M, N Hozzein W, Duan YQ, Li WJ	J Photochem Photobiol B	10.1016/j.jphotobiol.2016.01.018	2016	*
Genetics	Draft Genome Sequence of MPKL 26, the Type Strain of the Novel Species Sinomonas mesophila.	Narsing Rao MP, Jiao JY, Liu L, Fang BZ, Zhang XT, Chen W, Zhao J, Xiao M, Li WJ	Genome Announc	10.1128/genomeA.00247-17	2017	*
Phylogeny	Sinomonas mesophila sp. nov., isolated from ancient fort soil.	Prabhu DM, Quadri SR, Cheng J, Liu L, Chen W, Yang Y, Hozzein WN, Lingappa K, Li WJ	J Antibiot (Tokyo)	10.1038/ja.2014.161	2014	*
Phylogeny	Sinomonas susongensis sp. nov., isolated from the surface of weathered biotite.	Bao YY, Huang Z, Mao DM, Sheng XF, He LY	Int J Syst Evol Microbiol	10.1099/ijs.0.000064	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22658

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28729

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Sinomonas mesophila MPKL 26

Sinomonas mesophila MPKL 26

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