Strain identifier

BacDive ID: 131431

Type strain: Yes

Species: Sinomonas mesophila

Strain history: W.-J. Li MPKL 26.

NCBI tax ID(s): 1531955 (species)

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General

@ref: 22658

BacDive-ID: 131431

DSM-Number: 28729

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Sinomonas mesophila DSM 28729 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1531955
  • Matching level: species

strain history

@refhistory
22658<- W.-J. Li, YIM; MPKL 26 <- D. Manikprabhu, Yunnan University, China
67770W.-J. Li MPKL 26.

doi: 10.13145/bacdive131431.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Micrococcaceae
  • genus: Sinomonas
  • species: Sinomonas mesophila
  • full scientific name: Sinomonas mesophila Prabhu et al. 2015

@ref: 22658

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micrococcaceae

genus: Sinomonas

species: Sinomonas mesophila

full scientific name: Sinomonas mesophila Prabhu et al. 2015

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480no91.763
69480100positive

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.964

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
22658soilKarnataka, Bidar Fort (17°55'19''N 77°31'24''E)IndiaINDAsia17.921977.5233
67770Soil of Bidar fortKarnatakaIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_7023.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3294;97_4040;98_5159;99_7023&stattab=map
  • Last taxonomy: Sinomonas
  • 16S sequence: KJ809567
  • Sequence Identity:
  • Total samples: 200
  • soil counts: 90
  • aquatic counts: 12
  • animal counts: 97
  • plant counts: 1

Sequence information

16S sequences

  • @ref: 22658
  • description: Sinomonas mesophila strain MPKL 26 16S ribosomal RNA gene, partial sequence
  • accession: KJ809567
  • length: 1528
  • database: ena
  • NCBI tax ID: 1531955

Genome sequences

  • @ref: 67770
  • description: Sinomonas mesophila MPKL 26
  • accession: GCA_001999765
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 1531955

GC content

@refGC-contentmethod
2265868.8high performance liquid chromatography (HPLC)
6777071.1genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno89no
flagellatedno97.356no
gram-positiveyes94.916no
anaerobicno99.533no
aerobicyes96.301no
halophileno86.068no
spore-formingno83.381no
glucose-utilyes84.54no
thermophileno96.401no
motileno94.525no
glucose-fermentno89.317no

External links

@ref: 22658

culture collection no.: DSM 28729, JCM 30094, NCIM 5552, MPKL 26

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25464972Sinomonas mesophila sp. nov., isolated from ancient fort soil.Prabhu DM, Quadri SR, Cheng J, Liu L, Chen W, Yang Y, Hozzein WN, Lingappa K, Li WJJ Antibiot (Tokyo)10.1038/ja.2014.1612014Anti-Bacterial Agents/pharmacology, DNA, Bacterial/genetics, Drug Resistance, Bacterial, Micrococcaceae/*classification/genetics/*isolation & purification, Phylogeny, Soil Microbiology, Species SpecificityEnzymology
Phylogeny25589734Sinomonas susongensis sp. nov., isolated from the surface of weathered biotite.Bao YY, Huang Z, Mao DM, Sheng XF, He LYInt J Syst Evol Microbiol10.1099/ijs.0.0000642015*Aluminum Silicates, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Ferrous Compounds, Glycolipids/chemistry, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Pathogenicity26982503Sunlight mediated synthesis of silver nanoparticles by a novel actinobacterium (Sinomonas mesophila MPKL 26) and its antimicrobial activity against multi drug resistant Staphylococcus aureus.Manikprabhu D, Cheng J, Chen W, Sunkara AK, Mane SB, Kumar R, das M, N Hozzein W, Duan YQ, Li WJJ Photochem Photobiol B10.1016/j.jphotobiol.2016.01.0182016Anti-Bacterial Agents/*pharmacology, Metal Nanoparticles/*chemistry, Methicillin-Resistant Staphylococcus aureus/*drug effects, Micrococcaceae/*metabolism, Microscopy, Electron, Transmission, Silver/*chemistry, *SunlightMetabolism
Genetics28450514Draft Genome Sequence of MPKL 26, the Type Strain of the Novel Species Sinomonas mesophila.Narsing Rao MP, Jiao JY, Liu L, Fang BZ, Zhang XT, Chen W, Zhao J, Xiao M, Li WJGenome Announc10.1128/genomeA.00247-172017

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22658Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28729Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28729)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes