Strain identifier
BacDive ID: 131431
Type strain: 
Species: Sinomonas mesophila
Strain history: W.-J. Li MPKL 26.
NCBI tax ID(s): 1531955 (species)
version 9.1 (current version)
General
@ref: 22658
BacDive-ID: 131431
DSM-Number: 28729
keywords: genome sequence, 16S sequence, Bacteria, Gram-positive
description: Sinomonas mesophila DSM 28729 is a Gram-positive bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1531955
- Matching level: species
strain history
| @ref | history |
|---|---|
| 22658 | <- W.-J. Li, YIM; MPKL 26 <- D. Manikprabhu, Yunnan University, China |
| 67770 | W.-J. Li MPKL 26. |
doi: 10.13145/bacdive131431.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Sinomonas
- species: Sinomonas mesophila
- full scientific name: Sinomonas mesophila Prabhu et al. 2015
@ref: 22658
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Sinomonas
species: Sinomonas mesophila
full scientific name: Sinomonas mesophila Prabhu et al. 2015
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 90.5 | |
| 69480 | 92.437 | positive |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H2)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 22658 | soil | Karnataka, Bidar Fort (17°55'19''N 77°31'24''E) | India | IND | Asia | 17.9219 | 77.5233 |
| 67770 | Soil of Bidar fort | Karnataka | India | IND | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_7023.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3294;97_4040;98_5159;99_7023&stattab=map
- Last taxonomy: Sinomonas
- 16S sequence: KJ809567
- Sequence Identity:
- Total samples: 200
- soil counts: 90
- aquatic counts: 12
- animal counts: 97
- plant counts: 1
Sequence information
16S sequences
- @ref: 22658
- description: Sinomonas mesophila strain MPKL 26 16S ribosomal RNA gene, partial sequence
- accession: KJ809567
- length: 1528
- database: nuccore
- NCBI tax ID: 1531955
Genome sequences
- @ref: 67770
- description: Sinomonas mesophila MPKL 26
- accession: GCA_001999765
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1531955
GC content
| @ref | GC-content | method |
|---|---|---|
| 22658 | 68.8 | high performance liquid chromatography (HPLC) |
| 67770 | 71.1 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 92.437 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.067 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.932 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 64.203 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.467 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 90.5 | no |
External links
@ref: 22658
culture collection no.: DSM 28729, JCM 30094, NCIM 5552, MPKL 26
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25464972 | Sinomonas mesophila sp. nov., isolated from ancient fort soil. | Prabhu DM, Quadri SR, Cheng J, Liu L, Chen W, Yang Y, Hozzein WN, Lingappa K, Li WJ | J Antibiot (Tokyo) | 10.1038/ja.2014.161 | 2014 | Anti-Bacterial Agents/pharmacology, DNA, Bacterial/genetics, Drug Resistance, Bacterial, Micrococcaceae/*classification/genetics/*isolation & purification, Phylogeny, Soil Microbiology, Species Specificity | Enzymology |
| Phylogeny | 25589734 | Sinomonas susongensis sp. nov., isolated from the surface of weathered biotite. | Bao YY, Huang Z, Mao DM, Sheng XF, He LY | Int J Syst Evol Microbiol | 10.1099/ijs.0.000064 | 2015 | *Aluminum Silicates, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Ferrous Compounds, Glycolipids/chemistry, Micrococcaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Pathogenicity | 26982503 | Sunlight mediated synthesis of silver nanoparticles by a novel actinobacterium (Sinomonas mesophila MPKL 26) and its antimicrobial activity against multi drug resistant Staphylococcus aureus. | Manikprabhu D, Cheng J, Chen W, Sunkara AK, Mane SB, Kumar R, das M, N Hozzein W, Duan YQ, Li WJ | J Photochem Photobiol B | 10.1016/j.jphotobiol.2016.01.018 | 2016 | Anti-Bacterial Agents/*pharmacology, Metal Nanoparticles/*chemistry, Methicillin-Resistant Staphylococcus aureus/*drug effects, Micrococcaceae/*metabolism, Microscopy, Electron, Transmission, Silver/*chemistry, *Sunlight | Metabolism |
| Genetics | 28450514 | Draft Genome Sequence of MPKL 26, the Type Strain of the Novel Species Sinomonas mesophila. | Narsing Rao MP, Jiao JY, Liu L, Fang BZ, Zhang XT, Chen W, Zhao J, Xiao M, Li WJ | Genome Announc | 10.1128/genomeA.00247-17 | 2017 |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22658 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28729 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28729) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |