Name: Pseudomonas granadensis F-278
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130577

Type strain:

Species: Pseudomonas granadensis

Strain Designation: F-278,770

Culture col. no.: DSM 28040, LMG 27940

Strain history: <- O. Genilloud, Fundación Medina, Granada, Spain; F-278,770 <- J. Pascual

NCBI tax ID(s): 1421430 (species)

SI-ID 391090

LMG 27940, DSM 28040

Section

Pseudomonas granadensis F-278 is a mesophilic bacterium that was isolated from soil.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas granadensis**
	Full Scientific Name (LPSN)	Pseudomonas granadensis Pascual et al. 2015

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #22027]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22027]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #22027]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22027]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

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Name of produced compound

cytotoxic compounds

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22027]	Sample type/isolated from	soil
[Ref.: #22027]	Geographic location (country and/or sea, region)	Granada, Tejeda, Almijara and Alhama Natural Park (36° 55' 53.99'' N 3° 51' 45.34'' W, 885 m above sea level)
[Ref.: #22027]	Country	Spain
[Ref.: #22027]	Country ISO 3 Code	ESP
[Ref.: #22027]	Continent	Europe
[Ref.: #22027]	Geographic location	36.9317°/-3.8626°
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG764746 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	448
Soil Samples	833
Animal Samples	521
Plant Samples	662
Total Samples	2464

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22027]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22027]	Pseudomonas granadensis partial 16S rRNA gene, type strain F-278,770T	HG764746	1419	ENA	1421430 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas granadensis LMG 27940	GCA_900105485	chromosome	GenBank	1421430 tax ID	*
[Ref.: #66792]	Pseudomonas granadensis strain LMG 27940	1421430.4	complete	PATRIC	1421430 tax ID	*
[Ref.: #66792]	Pseudomonas granadensis LMG 27940	2667527397	draft	JGI IMG/M	1421430 tax ID	*

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GC-content

60.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas granadensis strain LMG 27940 PATRIC: 1421430.4
[Ref.: #69480]	motile	yes	92.329	no
[Ref.: #69480]	gram-positive	no	98.124	no
[Ref.: #69480]	anaerobic	no	97.442	no
[Ref.: #69480]	halophile	no	89.806	no
[Ref.: #69480]	spore-forming	no	95.852	no
[Ref.: #69480]	thermophile	no	99.857	yes
[Ref.: #69480]	glucose-util	yes	93.541	no
[Ref.: #69480]	aerobic	yes	93.629	no
[Ref.: #69480]	flagellated	yes	85.441	no
[Ref.: #69480]	glucose-ferment	no	89.693	no

Availability in culture collections External links

[Ref.: #22027]

Culture collection no.

DSM 28040, LMG 27940

[Ref.: #89094]

SI-ID 391090

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas kribbensis sp. nov., isolated from garden soils in Daejeon, Korea.	Chang DH, Rhee MS, Kim JS, Lee Y, Park MY, Kim H, Lee SG, Kim BC	Antonie Van Leeuwenhoek	10.1007/s10482-016-0743-0	2016	*
Phylogeny	Pseudomonas granadensis sp. nov., a new bacterial species isolated from the Tejeda, Almijara and Alhama Natural Park, Granada, Spain.	Pascual J, Garcia-Lopez M, Bills GF, Genilloud O	Int J Syst Evol Microbiol	10.1099/ijs.0.069260-0	2014	*
Phylogeny	Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils.	Korshunova TY, Ramirez-Bahena MH, Chetverikov SP, Igual JM, Peix A, Loginov O	Int J Syst Evol Microbiol	10.1099/ijsem.0.001406	2016	*
Pathogenicity	Identification of the Lipodepsipeptide MDN-0066, a Novel Inhibitor of VHL/HIF Pathway Produced by a New Pseudomonas Species.	Cautain B, de Pedro N, Schulz C, Pascual J, Sousa Tda S, Martin J, Perez-Victoria I, Asensio F, Gonzalez I, Bills GF, Reyes F, Genilloud O, Vicente F	PLoS One	10.1371/journal.pone.0125221	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22027

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28040

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89094

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391090.1 )

* These data were automatically processed and therefore are not curated

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Pseudomonas granadensis strain LMG 27940

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