Strain identifier
BacDive ID: 130577
Type strain: 
Species: Pseudomonas granadensis
Strain Designation: F-278,770
Strain history: <- O. Genilloud, Fundación Medina, Granada, Spain; F-278,770 <- J. Pascual
NCBI tax ID(s): 1421430 (species)
version 8.1 (current version)
General
@ref: 22027
BacDive-ID: 130577
DSM-Number: 28040
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Pseudomonas granadensis F-278 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 1421430
- Matching level: species
strain history
- @ref: 22027
- history: <- O. Genilloud, Fundación Medina, Granada, Spain; F-278,770 <- J. Pascual
doi: 10.13145/bacdive130577.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas granadensis
- full scientific name: Pseudomonas granadensis Pascual et al. 2015
@ref: 22027
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas granadensis
full scientific name: Pseudomonas granadensis Pascual et al. 2015
strain designation: F-278,770
type strain: yes
Morphology
multimedia
- @ref: 22027
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28040.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 22027
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 22027
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
compound production
- @ref: 22027
- compound: cytotoxic compounds
Isolation, sampling and environmental information
isolation
- @ref: 22027
- sample type: soil
- geographic location: Granada, Tejeda, Almijara and Alhama Natural Park (36° 55' 53.99'' N 3° 51' 45.34'' W, 885 m above sea level)
- country: Spain
- origin.country: ESP
- continent: Europe
- latitude: 36.9317
- longitude: -3.8626
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_185.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_98;99_185&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: HG764746
- Sequence Identity:
- Total samples: 2464
- soil counts: 833
- aquatic counts: 448
- animal counts: 521
- plant counts: 662
Safety information
risk assessment
- @ref: 22027
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 22027
- description: Pseudomonas granadensis partial 16S rRNA gene, type strain F-278,770T
- accession: HG764746
- length: 1419
- database: ena
- NCBI tax ID: 1421430
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudomonas granadensis LMG 27940 | GCA_900105485 | chromosome | ncbi | 1421430 |
| 66792 | Pseudomonas granadensis strain LMG 27940 | 1421430.4 | complete | patric | 1421430 |
| 66792 | Pseudomonas granadensis LMG 27940 | 2667527397 | draft | img | 1421430 |
GC content
- @ref: 22027
- GC-content: 60.3
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 92.329 | no |
| gram-positive | no | 98.124 | no |
| anaerobic | no | 97.442 | no |
| halophile | no | 89.806 | no |
| spore-forming | no | 95.852 | no |
| thermophile | no | 99.857 | yes |
| glucose-util | yes | 93.541 | no |
| aerobic | yes | 93.629 | no |
| flagellated | yes | 85.441 | no |
| glucose-ferment | no | 89.693 | no |
External links
@ref: 22027
culture collection no.: DSM 28040, LMG 27940
straininfo link
- @ref: 89094
- straininfo: 391090
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25410940 | Pseudomonas granadensis sp. nov., a new bacterial species isolated from the Tejeda, Almijara and Alhama Natural Park, Granada, Spain. | Pascual J, Garcia-Lopez M, Bills GF, Genilloud O | Int J Syst Evol Microbiol | 10.1099/ijs.0.069260-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flagella, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spain | Genetics |
| Pathogenicity | 26018559 | Identification of the Lipodepsipeptide MDN-0066, a Novel Inhibitor of VHL/HIF Pathway Produced by a New Pseudomonas Species. | Cautain B, de Pedro N, Schulz C, Pascual J, Sousa Tda S, Martin J, Perez-Victoria I, Asensio F, Gonzalez I, Bills GF, Reyes F, Genilloud O, Vicente F | PLoS One | 10.1371/journal.pone.0125221 | 2015 | Antineoplastic Agents/pharmacology, Carcinoma, Renal Cell/drug therapy/genetics/pathology, Cell Line, Tumor/drug effects, Depsipeptides/isolation & purification/metabolism/*pharmacology, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor/*methods, Fermentation, Humans, Kidney Neoplasms/drug therapy/genetics/pathology, Lipopeptides/isolation & purification/metabolism/*pharmacology, Magnetic Resonance Spectroscopy, Metabolic Networks and Pathways/drug effects, Molecular Structure, Molecular Targeted Therapy/methods, Pseudomonas/*metabolism, Von Hippel-Lindau Tumor Suppressor Protein/*antagonists & inhibitors/genetics/metabolism | Metabolism |
| Phylogeny | 27460204 | Pseudomonas kribbensis sp. nov., isolated from garden soils in Daejeon, Korea. | Chang DH, Rhee MS, Kim JS, Lee Y, Park MY, Kim H, Lee SG, Kim BC | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0743-0 | 2016 | Base Composition, DNA, Bacterial, Gardens, Molecular Typing, Phylogeny, Pseudomonas/classification/genetics/*isolation & purification/ultrastructure, RNA, Bacterial, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology | Enzymology |
| Phylogeny | 27503709 | Pseudomonas turukhanskensis sp. nov., isolated from oil-contaminated soils. | Korshunova TY, Ramirez-Bahena MH, Chetverikov SP, Igual JM, Peix A, Loginov O | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001406 | 2016 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Petroleum Pollution, *Phylogeny, Pseudomonas/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Siberia, *Soil Microbiology, Ubiquinone/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22027 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28040 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28040) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 89094 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID391090.1 |