Name: Pseudomonas yamanorum 8H1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 130578

Type strain:

Species: Pseudomonas yamanorum

Strain Designation: 8H1

Culture col. no.: DSM 26522, CCUG 63249, LMG 27247

Strain history: <- O. Delgado, PROIMI-CONICET; 8H1

NCBI tax ID(s): 515393 (species)

SI-ID 381333

LMG 27247, DSM 26522, CCUG 63249

Other strains from Pseudomonas yamanorum

P. yamanorum DSM 2005, SN 6

Section

Pseudomonas yamanorum 8H1 is an aerobe, mesophilic bacterium that was isolated from soil from a subantarctic environment.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Pseudomonadales*
	Family	*Pseudomonadaceae*
	Genus	*Pseudomonas*
	Species	**Pseudomonas yamanorum**
	Full Scientific Name (LPSN)	Pseudomonas yamanorum Arnau et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #62955]

Incubation period

1 day

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22028]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #22028]

Culture medium growth

[Ref.: #22028]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22028]

Culture medium composition

expand / minimize

[Ref.: #22028]

Culture medium

LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)

[Ref.: #22028]

Culture medium growth

[Ref.: #22028]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22028]

Culture medium composition

expand / minimize

[Ref.: #22028]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #22028]

Culture medium growth

[Ref.: #22028]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22028]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22028]			growth	25 °C
[Ref.: #62955]			growth	30 °C

[Ref.: #22028]	Temperature range	mesophilic
[Ref.: #62955]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62955]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	+	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #22028]	24884	-	-	-	+	-	-	+	-	+	+	+	+	+	-	+	+	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22028]	Sample type/isolated from	soil from a subantarctic environment
[Ref.: #22028]	Geographic location (country and/or sea, region)	Ushuaia, Isla de Los Estados at the Observatory Island location (54° 39' S 64° 08' W)
[Ref.: #22028]	Country	Argentina
[Ref.: #22028]	Country ISO 3 Code	ARG
[Ref.: #22028]	Continent	Middle and South America
[Ref.: #22028]	Geographic location	-54.6500°/-64.1333°

[Ref.: #62955]	Sample type/isolated from	Soil sample
[Ref.: #62955]	Sampling date	2005-01-15
[Ref.: #62955]	Geographic location (country and/or sea, region)	Isla de los Estados
[Ref.: #62955]	Country	Argentina
[Ref.: #62955]	Country ISO 3 Code	ARG
[Ref.: #62955]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Climate	#Cold	#Subarctic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU557337 (>99% sequence identity) for Pseudomonas from Microbeatlas

Aquatic Samples	207
Soil Samples	80
Animal Samples	151
Plant Samples	34
Total Samples	472

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #22028]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #22028]	Pseudomonas yamanorum strain 8H1 16S ribosomal RNA gene, partial sequence	EU557337	1436	ENA	515393 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pseudomonas yamanorum LMG 27247	GCA_900105735	chromosome	GenBank	515393 tax ID	*
[Ref.: #66792]	Pseudomonas yamanorum strain LMG 27247	515393.3	complete	PATRIC	515393 tax ID	*
[Ref.: #66792]	Pseudomonas yamanorum LMG 27247	2667528168	draft	JGI IMG/M	515393 tax ID	*

[Ref.: #22028]

GC-content

59.8 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pseudomonas yamanorum strain LMG 27247 PATRIC: 515393.3
[Ref.: #69480]	gram-positive	no	98.295	no
[Ref.: #69480]	anaerobic	no	98.478	yes
[Ref.: #69480]	halophile	no	87.146	no
[Ref.: #69480]	spore-forming	no	94.765	no
[Ref.: #69480]	glucose-util	yes	95.375	yes
[Ref.: #69480]	aerobic	yes	95.143	yes
[Ref.: #69480]	thermophile	no	99.852	no
[Ref.: #69480]	flagellated	yes	75.736	no
[Ref.: #69480]	motile	yes	90.117	no
[Ref.: #69480]	glucose-ferment	no	88.403	yes

Availability in culture collections External links

[Ref.: #22028]

Culture collection no.

DSM 26522, CCUG 63249, LMG 27247

[Ref.: #89095]

SI-ID 381333

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pseudomonas yamanorum sp. nov., a psychrotolerant bacterium isolated from a subantarctic environment.	Arnau VG, Sanchez LA, Delgado OD	Int J Syst Evol Microbiol	10.1099/ijs.0.065201-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22028

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26522

#62955 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 63249

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89095

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID381333.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Pseudomonas yamanorum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Pseudomonas yamanorum strain LMG 27247

Change proposal

Change proposal