Arthrobacter pityocampae (DSM 21719, NCCB 100254, Tp2)

Name: Arthrobacter pityocampae (DSM 21719, NCCB 100254, Tp2)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130421

Type strain

Strain Designation Tp2

Culture col. no. DSM 21719 NCCB 100254 Tp2

NCBI tax ID(s) 547334

Special Collections DSMZ

History DSMZ <- Karadeniz Techn. Univ., Trabzon, Turkey; Tp2 <- I. A. Ince

Links

Arthrobacter pityocampae Tp2 is a bacterium that was isolated from healthy larva of a pine processionary moth Thaumetopoea pityocampa .

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400930

NCCB 100254,DSM 21719

@ref 20215

Last LPSN update 2026-05-29 08:37:22

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Arthrobacter

Species Arthrobacter pityocampae

Full scientific name Arthrobacter pityocampae ?nce et al. 2014

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	90.726

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21484	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
21484	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	90.9

Spore formation

@ref	Spore formation	Confidence
125439		94.922

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
21484	healthy larva of a pine processionary moth Thaumetopoea pityocampa (Den. & Schiff.)	Thaumetopoea pityocampa	Middle Black Sea region, Samsun	Turkey	TUR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21484	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM292727v1 assembly for Arthrobacter pityocampae Tp2	scaffold	GCA_002927275	547334.4	2791355138	547334	70.1

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21484	Arthrobacter pityocampae strain Tp2 16S ribosomal RNA gene, partial sequence	EU855749	1408		547334

GC content

@ref	GC-content (mol%)	Method
21484	69.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM292727v1 assembly for Arthrobacter pityocampae Tp2
NCBI: GCA_002927275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	positive	85.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	90.90	no
125439	motility	BacteriaNetⓘ	no	74.90	no
125439	spore_formation	BacteriaNetⓘ	no	94.92	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Arthrobacter pityocampae Tp2
NCBI: GCA_002927275.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	90.73	no
125438	anaerobic	anaerobicⓘ	no	99.20	no
125438	aerobic	aerobicⓘ	yes	88.34	no
125438	spore-forming	spore-formingⓘ	no	71.26	no
125438	thermophilic	thermophileⓘ	no	96.00	no
125438	flagellated	motile2+ⓘ	no	73.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arthrobacter pityocampae sp. nov., isolated from Thaumetopoea pityocampa (Lep., Thaumetopoeidae).	Ince IA, Demirbag Z, Kati H	Int J Syst Evol Microbiol	10.1099/ijs.0.060731-0	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21484	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21719
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Arthrobacter pityocampae (DSM 21719, NCCB 100254, Tp2)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002927275

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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