Strain identifier
BacDive ID: 130421
Type strain: 
Species: Arthrobacter pityocampae
Strain Designation: Tp2
Strain history: <- Karadeniz Techn. Univ., Trabzon, Turkey; Tp2 <- I. A. Ince
NCBI tax ID(s): 547334 (species)
version 8.1 (current version)
General
@ref: 21484
BacDive-ID: 130421
DSM-Number: 21719
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Arthrobacter pityocampae Tp2 is a mesophilic, Gram-positive bacterium that was isolated from healthy larva of a pine processionary moth Thaumetopoea pityocampa .
NCBI tax id
- NCBI tax id: 547334
- Matching level: species
strain history
- @ref: 21484
- history: <- Karadeniz Techn. Univ., Trabzon, Turkey; Tp2 <- I. A. Ince
doi: 10.13145/bacdive130421.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Arthrobacter
- species: Arthrobacter pityocampae
- full scientific name: Arthrobacter pityocampae ?nce et al. 2014
@ref: 21484
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Micrococcaceae
genus: Arthrobacter
species: Arthrobacter pityocampae
full scientific name: Arthrobacter pityocampae ?nce et al. 2014
strain designation: Tp2
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Culture and growth conditions
culture medium
- @ref: 21484
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 21484
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 95 |
| 69480 | no | 99.711 |
Isolation, sampling and environmental information
isolation
- @ref: 21484
- sample type: healthy larva of a pine processionary moth Thaumetopoea pityocampa (Den. & Schiff.)
- host species: Thaumetopoea pityocampa
- geographic location: Middle Black Sea region, Samsun
- country: Turkey
- origin.country: TUR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host | #Plants | #Tree |
Safety information
risk assessment
- @ref: 21484
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 21484
- description: Arthrobacter pityocampae strain Tp2 16S ribosomal RNA gene, partial sequence
- accession: EU855749
- length: 1408
- database: ena
- NCBI tax ID: 547334
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Arthrobacter pityocampae Tp2 | GCA_002927275 | scaffold | ncbi | 547334 |
| 66792 | Arthrobacter pityocampae strain Tp2 | 547334.4 | wgs | patric | 547334 |
| 66792 | Arthrobacter pityocampae Tp2 | 2791355138 | draft | img | 547334 |
GC content
- @ref: 21484
- GC-content: 69.5
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 95 | no |
| flagellated | no | 90.913 | no |
| gram-positive | yes | 93.351 | no |
| anaerobic | no | 99.647 | no |
| aerobic | yes | 95 | no |
| halophile | no | 76.014 | no |
| spore-forming | no | 91.501 | no |
| glucose-util | yes | 84.919 | no |
| thermophile | no | 98.988 | yes |
| motile | yes | 58.795 | no |
| glucose-ferment | no | 87.882 | no |
External links
@ref: 21484
culture collection no.: DSM 21719, NCCB 100254
straininfo link
- @ref: 88953
- straininfo: 400930
literature
- topic: Phylogeny
- Pubmed-ID: 25013228
- title: Arthrobacter pityocampae sp. nov., isolated from Thaumetopoea pityocampa (Lep., Thaumetopoeidae).
- authors: Ince IA, Demirbag Z, Kati H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.060731-0
- year: 2014
- mesh: Animals, Arthrobacter/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Larva/microbiology, Molecular Sequence Data, Moths/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Turkey, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 21484 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21719 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21719) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 88953 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400930.1 |