Name: Paeniglutamicibacter antarcticus DSM 29880
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 130420

Type strain:

Species: Paeniglutamicibacter antarcticus

Culture col. no.: DSM 29880, LMG 24542, NCCB 100228, SPC 26, JCM 18952

Strain history: LMG 24542 <-- S. Shivaji SPC26 <-- P. K. Pindi.

NCBI tax ID(s): 494023 (species)

SI-ID 343384

LMG 24542, NCCB 100228, JCM 18952, DSM 29880

Special Collections

Section

Paeniglutamicibacter antarcticus DSM 29880 is an aerobe, Gram-positive, motile bacterium that was isolated from spade core sediment.

Gram-positive
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Micrococcaceae*
	Genus	*Paeniglutamicibacter*
	Species	**Paeniglutamicibacter antarcticus**
	Full Scientific Name (LPSN)	Paeniglutamicibacter antarcticus (Pindi et al. 2010) Busse 2016

Synonym

Arthrobacter antarcticus

Information on morphological and physiological properties Morphology

[Ref.: #29430]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %94.98

[Ref.: #29430]	Cell length	1.5-2.2 µm

[Ref.: #29430]	Cell width	0.2-0.3 µm

[Ref.: #29430]	Cell shape	rod-shaped

[Ref.: #29430]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #21483]

Incubation period

3-7 days

[Ref.: #29430]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #21483]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #21483]

Culture medium growth

[Ref.: #21483]

Culture medium link

Medium recipe at MediaDive

[Ref.: #21483]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #21483]	growth	25 °C
[Ref.: #29430]	growth	04-25 °C
[Ref.: #29430]	optimum	22-25 °C
[Ref.: #67770]	growth	22 °C

	pH	Kind of pH		pH
[Ref.: #29430]			optimum	7
[Ref.: #29430]			growth	04-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29430]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29430]		NaCl		growth	0-8	%
[Ref.: #29430]		NaCl		optimum	0-6	%

[Ref.: #29430]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-8, MK-9, MK-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29430]	arabinose ChEBI	+	carbon source
[Ref.: #29430]	galactose ChEBI	+	carbon source
[Ref.: #29430]	glucose ChEBI	+	carbon source
[Ref.: #29430]	malonate ChEBI	+	carbon source
[Ref.: #29430]	rhamnose ChEBI	+	carbon source
[Ref.: #29430]	xylose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29430]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #21483]	Sample type/isolated from	spade core sediment
[Ref.: #21483]	Geographic location (country and/or sea, region)	Larsemann Hill
[Ref.: #21483]	Continent	Australia and Oceania
[Ref.: #21483]	Geographic location	-69.3667°/76.1000°

[Ref.: #67770]	Sample type/isolated from	Southern Ocean sediment from near the Larsemann Hills area of Antarctica
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Core sample
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM931709 (>99% sequence identity) for Paeniglutamicibacter from Microbeatlas

Aquatic Samples	125
Soil Samples	596
Animal Samples	660
Plant Samples	232
Total Samples	1613

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #21483]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #21483]	Arthrobacter antarcticus partial 16S rRNA gene, type strain SPC 26T	AM931709	1519	GenBank ENA	494023 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paeniglutamicibacter antarcticus strain DSM 29880	494023.8	wgs	PATRIC	494023 tax ID	*
[Ref.: #66792]	Arthrobacter antarcticus DSM 29880	2918409668	draft	JGI IMG/M	494023 tax ID	*

[Ref.: #29430]	GC-content	68 mol%
[Ref.: #67770]	GC-content	67.5-68.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paeniglutamicibacter antarcticus strain DSM 29880 PATRIC: 494023.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	72	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paeniglutamicibacter antarcticus strain DSM 29880 PATRIC: 494023.8
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	94.98	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.698	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	75.716	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.816	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.611	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #21483]

Culture collection no.

DSM 29880, LMG 24542, NCCB 100228, SPC 26, JCM 18952

[Ref.: #88952]

SI-ID 343384

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paeniglutamicibacter terrestris sp. nov., isolated from phenanthrene-degrading consortium enriched from Antarctic soil.	Sakdapetsiri C, Kuntaveesuk A, Ngaemthao W, Suriyachadkun C, Muangchinda C, Chavanich S, Viyakarn V, Chen B, Pinyakong O	Int J Syst Evol Microbiol	10.1099/ijsem.0.004689	2021	*
Phylogeny	Arthrobacter antarcticus sp. nov., isolated from an Antarctic marine sediment.	Pindi PK, Manorama R, Begum Z, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.012989-0	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21483

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29880

#29430

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25836 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#88952

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343384.1 )

#25836

IJSEM 2263 2010 ( DOI 10.1099/ijs.0.012989-0 , PubMed 19783612 )

* These data were automatically processed and therefore are not curated

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Paeniglutamicibacter antarcticus strain DSM 29880

Paeniglutamicibacter antarcticus strain DSM 29880

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