Paeniglutamicibacter antarcticus (DSM 29880, LMG 24542, NCCB 100228)

Name: Paeniglutamicibacter antarcticus (DSM 29880, LMG 24542, NCCB 100228)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 130420

Type strain

Culture col. no. DSM 29880 LMG 24542 NCCB 100228 SPC 26 JCM 18952

NCBI tax ID(s) 494023

Special Collections DSMZ JCM Literature strains

Links

Paeniglutamicibacter antarcticus DSM 29880 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from spade core sediment.

Gram-positive motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 343384

LMG 24542,NCCB 100228,JCM 18952,DSM 29880

@ref 20215

Last LPSN update 2025-12-16 10:00:59

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Micrococcaceae

Genus Paeniglutamicibacter

Species Paeniglutamicibacter antarcticus

Full scientific name Paeniglutamicibacter antarcticus (Pindi et al. 2010) Busse 2016

Synonyms (1)

Arthrobacter antarcticus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
29430	positive	1.5-2.2 µm	0.2-0.3 µm	rod-shaped
125438
125438	positive

Colony morphology

21483

Incubation period3-7 days

Pigmentation

29430

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
21483	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
21483	positive	growth	25	mesophilic
29430	positive	growth	04-25
29430	positive	optimum	22-25
67770	positive	growth	22	psychrophilic

Culture pH

@ref	Ability	Type	PH
29430	positive	optimum	7
29430	positive	growth	04-10

Physiology and metabolism

Oxygen tolerance

29430

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		95.8

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29430	NaCl	positive	growth	0-8 %
29430	NaCl	positive	optimum	0-6 %

Observation

@ref	Observation
29430	aggregates in chains
67770	quinones: MK-8, MK-9, MK-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29430	22599 ChEBI	arabinose	+	carbon source
29430	28260 ChEBI	galactose	+	carbon source
29430	17234 ChEBI	glucose	+	carbon source
29430	15792 ChEBI	malonate	+	carbon source
29430	26546 ChEBI	rhamnose	+	carbon source
29430	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29430	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Core sample
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Continent	Latitude	Longitude
21483	spade core sediment	Larsemann Hill	Australia and Oceania	-69.3667	76.1 -69.3667/76.1
67770	Southern Ocean sediment from near the Larsemann Hills area of Antarctica

Taxonmaps

69479

Global distribution of 16S sequence AM931709 (>99% sequence identity) for Paeniglutamicibacter from Microbeatlas

Aquatic Samples	125
Soil Samples	596
Animal Samples	660
Plant Samples	232
Total Samples	1613

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
21483	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	IMG accession	NCBI tax ID	Score
66792	Arthrobacter antarcticus DSM 29880	complete	2918409668	494023	99.52
66792	Paeniglutamicibacter antarcticus strain DSM 29880	contig		494023	78.39
124043	ASM3954430v1 assembly for Paeniglutamicibacter antarcticus JCM 18952	contig		494023	59.45

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
21483	Arthrobacter antarcticus partial 16S rRNA gene, type strain SPC 26T	AM931709	1519		494023

GC content

@ref	GC-content (mol%)
29430	68
67770	67.5-68.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paeniglutamicibacter antarcticus strain DSM 29880
PATRIC: 494023.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.80	no
125439	motility	BacteriaNetⓘ	no	53.30	no
125439	gram_stain	BacteriaNetⓘ	negative	61.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	57.90	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paeniglutamicibacter antarcticus strain DSM 29880
PATRIC: 494023.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.98	yes
125438	anaerobic	anaerobicⓘ	no	98.70	yes
125438	spore-forming	spore-formingⓘ	no	75.72	no
125438	aerobic	aerobicⓘ	yes	87.82	yes
125438	thermophilic	thermophileⓘ	no	97.61	yes
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paeniglutamicibacter terrestris sp. nov., isolated from phenanthrene-degrading consortium enriched from Antarctic soil.	Sakdapetsiri C, Kuntaveesuk A, Ngaemthao W, Suriyachadkun C, Muangchinda C, Chavanich S, Viyakarn V, Chen B, Pinyakong O	Int J Syst Evol Microbiol	10.1099/ijsem.0.004689	2021
Phylogeny	Arthrobacter antarcticus sp. nov., isolated from an Antarctic marine sediment.	Pindi PK, Manorama R, Begum Z, Shivaji S	Int J Syst Evol Microbiol	10.1099/ijs.0.012989-0	2009

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#21483	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29880
#29430	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25836 (see below)
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paeniglutamicibacter antarcticus (DSM 29880, LMG 24542, NCCB 100228)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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