Alkalicoccobacillus murimartini (DSM 19154, LMG 21005, NCIMB 14102)

Name: Alkalicoccobacillus murimartini (DSM 19154, LMG 21005, NCIMB 14102)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 1278

Type strain

Culture col. no. DSM 19154 LMG 21005 NCIMB 14102

NCBI tax ID(s) 171685

Special Collections DSMZ Literature strains

History DSMZ <- LMG <- J. Heyrman, R-8459

Links

Alkalicoccobacillus murimartini DSM 19154 is a spore-forming, Gram-positive, motile bacterium that was isolated from mural painting, St. Martin Church.

spore-forming Gram-positive motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 88390

LMG 21005,NCIMB 14102,DSM 19154

@ref 20215

Last LPSN update 2026-05-29 08:25:13

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Alkalicoccobacillus

Species Alkalicoccobacillus murimartini

Full scientific name Alkalicoccobacillus murimartini (Borchert et al. 2007) Joshi et al. 2022

Synonyms (2)

Bacillus murimartini
Alkalihalobacillus murimartini

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
32239	positive	2.5 µm	0.5 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7942	ALKALINE NUTRIENT AGAR (DSMZ Medium 31)		Medium recipe at MediaDive	Name: ALKALINE NUTRIENT AGAR (DSMZ Medium 31) Composition: Agar 15.0 g/l Na2CO3 anhydrous 5.3 g/l Peptone 5.0 g/l NaHCO3 4.2 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
7942	positive	growth	28
32239	positive	growth	10-30
32239	positive	optimum	17.5

Culture pH

@ref	Ability	Type	PH	PH range
32239	positive	optimum	8.5
32239	positive	growth	07-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	98.406

Spore formation

@ref	Spore formation	Confidence
32239
125438		95.341
125439		94.587

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32239	NaCl	positive	growth	<4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32239	17057 ChEBI	cellobiose	+	carbon source
32239	16947 ChEBI	citrate	+	carbon source
32239	28757 ChEBI	fructose	+	carbon source
32239	28260 ChEBI	galactose	+	carbon source
32239	5291 ChEBI	gelatin	+	carbon source
32239	17234 ChEBI	glucose	+	carbon source
32239	17754 ChEBI	glycerol	+	carbon source
32239	17716 ChEBI	lactose	+	carbon source
32239	17306 ChEBI	maltose	+	carbon source
32239	29864 ChEBI	mannitol	+	carbon source
32239	37684 ChEBI	mannose	+	carbon source
32239	28053 ChEBI	melibiose	+	carbon source
32239	506227 ChEBI	N-acetylglucosamine	+	carbon source
32239	17632 ChEBI	nitrate	+	reduction
32239	33942 ChEBI	ribose	+	carbon source
32239	17814 ChEBI	salicin	+	carbon source
32239	30911 ChEBI	sorbitol	+	carbon source
32239	17992 ChEBI	sucrose	+	carbon source
32239	27082 ChEBI	trehalose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32239	acid phosphatase	+	3.1.3.2
32239	alkaline phosphatase	+	3.1.3.1
32239	catalase	+	1.11.1.6
32239	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Built environment	-
#Engineered	#Other	#Painting

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
7942	mural painting, St. Martin Church	Greene-Kreiensen	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7942	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3081324v1 assembly for Alkalicoccobacillus murimartini DSM 19154	contig	GCA_030813245	171685.7	2926524226	171685	74.96
66792	ASM127470v1 assembly for Alkalicoccobacillus murimartini LMG21005	scaffold	GCA_001274705	171685.4	2639763118	171685	51.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
7942	Bacillus murimartini partial 16S rRNA gene, strain LMG 21005	AJ316316	1505		171685

GC content

7942

GC-content (mol%)39.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3081324v1 assembly for Alkalicoccobacillus murimartini DSM 19154
NCBI: GCA_030813245

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.41	no
125439	gram_stain	BacteriaNetⓘ	variable	62.93	no
125439	motility	BacteriaNetⓘ	yes	89.24	no
125439	spore_formation	BacteriaNetⓘ	yes	94.59	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Bacillus murimartini strain LMG21005
PATRIC: 171685.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	83.73	no
125438	anaerobic	anaerobicⓘ	no	89.46	no
125438	spore-forming	spore-formingⓘ	yes	95.34	yes
125438	aerobic	aerobicⓘ	yes	70.70	no
125438	thermophilic	thermophileⓘ	no	95.09	yes
125438	flagellated	motile2+ⓘ	yes	88.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus murimartini LMG 21005T, an Alkalitolerant Bacterium Isolated from a Church Wall Mural in Germany.	Wang JP, Liu B, Liu GH, Xiao RF, Zheng XF, Shi H, Ge CB	Genome Announc	10.1128/genomeA.01229-15	2015
Phylogeny	Alkalicoccobacillus porphyridii sp. nov., isolated from a marine red alga, reclassification of Shouchella plakortidis and Shouchella gibsonii as Alkalicoccobacillus plakortidis comb. nov. and Alkalicoccobacillus gibsonii comb. nov., and emended description of the genus Alkalicoccobacillus Joshi et al. 2022.	Kim KH, Han DM, Lee JK, Jeon CO.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006019	2023
	Alkalihalobacterium elongatum gen. nov. sp. nov.: An Antibiotic-Producing Bacterium Isolated From Lonar Lake and Reclassification of the Genus Alkalihalobacillus Into Seven Novel Genera.	Joshi A, Thite S, Karodi P, Joseph N, Lodha T.	Front Microbiol	10.3389/fmicb.2021.722369	2021
Phylogeny	Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6.	Borchert MS, Nielsen P, Graeber I, Kaesler I, Szewzyk U, Pape T, Antranikian G, Schafer T	Int J Syst Evol Microbiol	10.1099/ijs.0.65177-0	2007

References

#7942	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19154
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28480	IJSEM 2888 2007 ( DOI 10.1099/ijs.0.65177-0 , PubMed 18048744 )
#32239	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28480
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Alkalicoccobacillus murimartini (DSM 19154, LMG 21005, NCIMB 14102)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_030813245

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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