Name: Alkalicoccobacillus murimartini DSM 19154
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1278

Type strain:

Species: Alkalicoccobacillus murimartini

Culture col. no.: DSM 19154, LMG 21005, NCIMB 14102

Strain history: <- LMG <- J. Heyrman, R-8459

NCBI tax ID(s): 171685 (species)

SI-ID 88390

LMG 21005, NCIMB 14102, DSM 19154

Special Collections

Section

Alkalicoccobacillus murimartini DSM 19154 is a spore-forming, Gram-positive, motile bacterium that was isolated from mural painting, St. Martin Church.

Gram-positive
motile
rod-shaped
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Alkalicoccobacillus*
	Species	**Alkalicoccobacillus murimartini**
	Full Scientific Name (LPSN)	Alkalicoccobacillus murimartini (Borchert et al. 2007) Joshi et al. 2022

	Synonym	Alkalihalobacillus murimartini
	Synonym	Bacillus murimartini

Information on morphological and physiological properties Morphology

[Ref.: #32239]	Gram stain	positive

[Ref.: #32239]	Cell length	2.5 µm

[Ref.: #32239]	Cell width	0.5 µm

[Ref.: #32239]	Cell shape	rod-shaped

[Ref.: #32239]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7942]

Culture medium

ALKALINE NUTRIENT AGAR (DSMZ Medium 31)

[Ref.: #7942]

Culture medium growth

[Ref.: #7942]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7942]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7942]	growth	28 °C
[Ref.: #32239]	growth	10-30 °C
[Ref.: #32239]	optimum	17.5 °C

	pH	Kind of pH		pH
[Ref.: #32239]			optimum	8.5
[Ref.: #32239]			growth	07-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32239]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %95.341
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32239]		NaCl		growth	<4	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32239]	cellobiose ChEBI	+	carbon source
[Ref.: #32239]	citrate ChEBI	+	carbon source
[Ref.: #32239]	fructose ChEBI	+	carbon source
[Ref.: #32239]	galactose ChEBI	+	carbon source
[Ref.: #32239]	gelatin ChEBI	+	carbon source
[Ref.: #32239]	glucose ChEBI	+	carbon source
[Ref.: #32239]	glycerol ChEBI	+	carbon source
[Ref.: #32239]	lactose ChEBI	+	carbon source
[Ref.: #32239]	maltose ChEBI	+	carbon source
[Ref.: #32239]	mannitol ChEBI	+	carbon source
[Ref.: #32239]	mannose ChEBI	+	carbon source
[Ref.: #32239]	melibiose ChEBI	+	carbon source
[Ref.: #32239]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32239]	nitrate ChEBI	+	reduction
[Ref.: #32239]	ribose ChEBI	+	carbon source
[Ref.: #32239]	salicin ChEBI	+	carbon source
[Ref.: #32239]	sorbitol ChEBI	+	carbon source
[Ref.: #32239]	sucrose ChEBI	+	carbon source
[Ref.: #32239]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #32239]	acid phosphatase	+	3.1.3.2
[Ref.: #32239]	alkaline phosphatase	+	3.1.3.1
[Ref.: #32239]	catalase	+	1.11.1.6
[Ref.: #32239]	cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7942]	Sample type/isolated from	mural painting, St. Martin Church
[Ref.: #7942]	Geographic location (country and/or sea, region)	Greene-Kreiensen
[Ref.: #7942]	Country	Germany
[Ref.: #7942]	Country ISO 3 Code	DEU
[Ref.: #7942]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Engineered	#Other	#Painting

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7942]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7942]	Bacillus murimartini partial 16S rRNA gene, strain LMG 21005	AJ316316	1505	GenBank ENA	171685 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus murimartini strain LMG21005	171685.4	wgs	PATRIC	171685 tax ID	*
[Ref.: #66792]	Alkalihalobacillus murimartini DSM 19154	2926524226	draft	JGI IMG/M	171685 tax ID	*
[Ref.: #66792]	Bacillus murimartini LMG21005	2639763118	draft	JGI IMG/M	171685 tax ID	*

[Ref.: #7942]

GC-content

39.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus murimartini strain LMG21005 PATRIC: 171685.4
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus murimartini strain LMG21005 PATRIC: 171685.4
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.726	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	89.462	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	95.341	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	70.701	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.091	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	88.402	no

Availability in culture collections External links

[Ref.: #7942]

Culture collection no.

DSM 19154, LMG 21005, NCIMB 14102

[Ref.: #70932]

SI-ID 88390

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequence of Bacillus murimartini LMG 21005T, an Alkalitolerant Bacterium Isolated from a Church Wall Mural in Germany.	Wang JP, Liu B, Liu GH, Xiao RF, Zheng XF, Shi H, Ge CB	Genome Announc	10.1128/genomeA.01229-15	2015	*
Phylogeny	Bacillus plakortidis sp. nov. and Bacillus murimartini sp. nov., novel alkalitolerant members of rRNA group 6.	Borchert MS, Nielsen P, Graeber I, Kaesler I, Szewzyk U, Pape T, Antranikian G, Schafer T	Int J Syst Evol Microbiol	10.1099/ijs.0.65177-0	2007	*

References

#7942

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19154

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32239

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28480 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70932

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88390.1 )

#28480

IJSEM 2888 2007 ( DOI 10.1099/ijs.0.65177-0 , PubMed 18048744 )

* These data were automatically processed and therefore are not curated

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Bacillus murimartini strain LMG21005

Bacillus murimartini strain LMG21005

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